Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30694
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           27   0.18 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           27   0.18 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.9  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 526 PGPPFCAKNEPVGIFESSANIGRDIASG 443
           P PPFC KN  +GI  +      D + G
Sbjct: 82  PSPPFCEKNPKLGILGTHGRQCNDTSIG 109


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 526 PGPPFCAKNEPVGIFESSANIGRDIASG 443
           P PPFC KN  +GI  +      D + G
Sbjct: 83  PSPPFCEKNPKLGILGTHGRQCNDTSIG 110


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +3

Query: 420 PTEAIGFLPEAMSLPIFALDSKIPTGSFLAQKGGPGTQFA 539
           PTEA    PEA       L  +IP    L Q   PG   A
Sbjct: 151 PTEASWHSPEAHISVAQKLQKEIPNSIILDQYTNPGNPLA 190


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 592 SHDVVKRRPVNCNTTHYRANWVPGPPFCAKNEPVGIFESSA 470
           S +  K++P +C+T  YR   V  P F      VG+  +SA
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLF---TPAVGVAAASA 597


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 284 SCSSFFYSAFYGFC 325
           SCSSFF   F+ +C
Sbjct: 418 SCSSFFQQFFHCYC 431


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 623 ALQHIPLSPAGVIAKRPAPIALPNSC 700
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 623 ALQHIPLSPAGVIAKRPAPIALPNSC 700
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,382
Number of Sequences: 438
Number of extensions: 3129
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)