Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30692
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   118   1e-27
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   118   1e-27
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.0  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   3.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.1  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  118 bits (283), Expect = 1e-27
 Identities = 49/75 (65%), Positives = 61/75 (81%)
 Frame = +2

Query: 26  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 205
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 206 TCQVAYSRIEGDHIV 250
           TCQ+  SR+ GD+++
Sbjct: 61  TCQIVSSRVNGDYVL 75



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 41/83 (49%), Positives = 59/83 (71%)
 Frame = +3

Query: 507 SMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKR 686
           +MKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++
Sbjct: 162 AMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQK 221

Query: 687 QFSKYIKLGVTADAIEAIYKKAH 755
           QFS  I  G+ +D +E IY +A+
Sbjct: 222 QFSGLIADGIESDQLEDIYAEAY 244



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 34/84 (40%), Positives = 45/84 (53%)
 Frame = +1

Query: 256 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 435
           A+S ELPRYG+K GL N+ AAY+TG                              E +++
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137

Query: 436 GPGAFRCYLDVGLARTTTGARVFG 507
           GP  F+ +LDVGL RT+TG+RVFG
Sbjct: 138 GPRPFKVFLDVGLKRTSTGSRVFG 161


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  118 bits (283), Expect = 1e-27
 Identities = 49/75 (65%), Positives = 61/75 (81%)
 Frame = +2

Query: 26  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 205
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 206 TCQVAYSRIEGDHIV 250
           TCQ+  SR+ GD+++
Sbjct: 61  TCQIVSSRVNGDYVL 75



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 41/83 (49%), Positives = 59/83 (71%)
 Frame = +3

Query: 507 SMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKR 686
           +MKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++
Sbjct: 162 AMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQK 221

Query: 687 QFSKYIKLGVTADAIEAIYKKAH 755
           QFS  I  G+ +D +E IY +A+
Sbjct: 222 QFSGLIADGIESDQLEDIYAEAY 244



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 34/84 (40%), Positives = 45/84 (53%)
 Frame = +1

Query: 256 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 435
           A+S ELPRYG+K GL N+ AAY+TG                              E +++
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137

Query: 436 GPGAFRCYLDVGLARTTTGARVFG 507
           GP  F+ +LDVGL RT+TG+RVFG
Sbjct: 138 GPRPFKVFLDVGLKRTSTGSRVFG 161


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 355 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 263
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 313 QHNLSDQPSHHNVATHVNKHAHNMVTFNPRVGHL 212
           QH+L  +   H   TH+ K  H+   F  RV +L
Sbjct: 59  QHDLDQEQDAHPRTTHLQKRQHSENRFGVRVENL 92


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 636  AEYMRSLEQDDEDSFKRQFSKYIK 707
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,941
Number of Sequences: 5004
Number of extensions: 66460
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)