Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30692
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 106 2e-23
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 105 4e-23
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 30 2.4
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512... 28 7.2
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 28 7.2
07_03_1404 + 26329179-26329455,26329602-26330878 28 9.5
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 28 9.5
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 106 bits (255), Expect = 2e-23
Identities = 41/85 (48%), Positives = 67/85 (78%)
Frame = +3
Query: 507 SMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKR 686
++KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+
Sbjct: 159 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQA 218
Query: 687 QFSKYIKLGVTADAIEAIYKKAHEA 761
FS+Y+K G+ AD +EA+YKK H A
Sbjct: 219 HFSEYLKKGIDADGMEALYKKVHAA 243
Score = 99.5 bits (237), Expect = 3e-21
Identities = 46/74 (62%), Positives = 55/74 (74%)
Frame = +2
Query: 29 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 208
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 209 CQVAYSRIEGDHIV 250
Q+ Y+ I GD ++
Sbjct: 60 AQIVYATIAGDIVM 73
Score = 78.6 bits (185), Expect = 5e-15
Identities = 43/84 (51%), Positives = 46/84 (54%)
Frame = +1
Query: 256 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 435
AYSHELPRYG++VGLTNYAAAY TG +Y VEP D
Sbjct: 76 AYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADE 135
Query: 436 GPGAFRCYLDVGLARTTTGARVFG 507
FR LDVGL RTTTG RVFG
Sbjct: 136 -RRPFRALLDVGLIRTTTGNRVFG 158
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 105 bits (252), Expect = 4e-23
Identities = 40/85 (47%), Positives = 67/85 (78%)
Frame = +3
Query: 507 SMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKR 686
++KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+
Sbjct: 159 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQA 218
Query: 687 QFSKYIKLGVTADAIEAIYKKAHEA 761
FS+Y+K G+ AD +E++YKK H A
Sbjct: 219 HFSEYLKKGIDADGMESLYKKVHAA 243
Score = 101 bits (243), Expect = 5e-22
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = +2
Query: 29 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 208
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 209 CQVAYSRIEGDHIV 250
Q+ Y+ I GD ++
Sbjct: 60 AQIVYATIAGDIVM 73
Score = 78.6 bits (185), Expect = 5e-15
Identities = 43/84 (51%), Positives = 46/84 (54%)
Frame = +1
Query: 256 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 435
AYSHELPRYG++VGLTNYAAAY TG +Y VEP D
Sbjct: 76 AYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADE 135
Query: 436 GPGAFRCYLDVGLARTTTGARVFG 507
FR LDVGL RTTTG RVFG
Sbjct: 136 -RRPFRALLDVGLIRTTTGNRVFG 158
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 573 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDE--DSFKRQFSKYIKLGVTADAIEAIYK 746
+A + K AE H L + E +R LE D DS + + + G+ +A+ K
Sbjct: 1512 NASTLKLLAEAH------LEIDELIRKLEDSDRKSDSLQSTIKRLEEDGIAKEALLLTEK 1565
Query: 747 KAHEAT 764
+AHEAT
Sbjct: 1566 QAHEAT 1571
>04_04_1146 +
31249488-31249722,31250145-31250236,31251158-31251209,
31251377-31251477,31251587-31252020,31252453-31252507,
31252614-31252667,31252774-31253190
Length = 479
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 522 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS-LEQDDEDSFKRQFSK 698
VDG +VP + G DA ++ A HR + HV ++ L + D F +
Sbjct: 329 VDGDGSVPVESAKADGLDAVARVGVAADHRGIVCDRHVFRIIQHWLHAGEPDPFYDPLND 388
Query: 699 YIKLGVTADAIEAIYKKAHEAT 764
Y+ L TA IE ++K + T
Sbjct: 389 YVIL-PTAFEIEKYHEKHGDIT 409
>01_01_0182 -
1561779-1561873,1561977-1562050,1562140-1562207,
1562279-1562371,1562521-1562604,1562697-1562752,
1562843-1562950,1563051-1563225,1563237-1563422
Length = 312
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -2
Query: 217 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 38
HL Y + + ++ FR +NN +TS ++++ T+P Y + +LF+ H
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170
Query: 37 NESH 26
+ H
Sbjct: 171 GDIH 174
>07_03_1404 + 26329179-26329455,26329602-26330878
Length = 517
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 288 HTITWQLM*ISTHTIWSPSIRE 223
H +TW + +STH W +RE
Sbjct: 332 HLLTWTMFLLSTHPEWQEKLRE 353
>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
Length = 519
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 288 HTITWQLM*ISTHTIWSPSIRE 223
H +TW + +STH W +RE
Sbjct: 334 HLLTWTMFLLSTHPDWQEKLRE 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,627,131
Number of Sequences: 37544
Number of extensions: 422227
Number of successful extensions: 886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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