Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30692
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   136   2e-32
AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical ...    29   4.8  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  136 bits (329), Expect = 2e-32
 Identities = 61/75 (81%), Positives = 68/75 (90%)
 Frame = +2

Query: 26  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 205
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 206 TCQVAYSRIEGDHIV 250
             Q+AYS+IEGD +V
Sbjct: 61  VAQLAYSKIEGDVVV 75



 Score =  111 bits (266), Expect = 7e-25
 Identities = 48/84 (57%), Positives = 62/84 (73%)
 Frame = +3

Query: 510 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 689
           MKG  DGG+NVPHS  RF G+D ESK++NAE HR  I G HVA+YM  L+++DED +KRQ
Sbjct: 162 MKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQ 221

Query: 690 FSKYIKLGVTADAIEAIYKKAHEA 761
           FSK++  G+ AD + A Y+K H A
Sbjct: 222 FSKFLAAGLNADNLVATYQKVHSA 245



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 40/85 (47%), Positives = 49/85 (57%)
 Frame = +1

Query: 256 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 435
           AYSHELPRYG+KVGLTNYAAAY+TG                          +YNVE  + 
Sbjct: 78  AYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEE-EG 136

Query: 436 GPGAFRCYLDVGLARTTTGARVFGV 510
               F+  LD+GLARTTTG+++F V
Sbjct: 137 DRAPFKAVLDIGLARTTTGSKIFAV 161


>AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical
           protein D2063.4 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -1

Query: 743 VDGFNSICSDS*FYVLAELSLERILIILFK--TSHVFSNMQTKDVSPVYFSIELFGFCII 570
           VDGF ++CS S   V + L ++++  +L +   +HV  ++  ++++ +   IE++     
Sbjct: 53  VDGFRNVCSGSDLSVRSNLDVKQLSELLKEDPCTHVAGDVVIENLTDIAIPIEVYKRVRH 112

Query: 569 ARESFDGMRNIEATVNSTLHTPKTRA 492
              S     N    ++S +H P  R+
Sbjct: 113 VHGSIIIANN--TNISSPIHFPSLRS 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,906,499
Number of Sequences: 27780
Number of extensions: 382458
Number of successful extensions: 946
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)