Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30691
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    96   2e-21
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    87   1e-18
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    28   0.73 
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   0.96 
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.9  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   6.8  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   9.0  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   9.0  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   9.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.0  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 58/122 (47%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
 Frame = +2

Query: 59  MSEGTATIRTRKFMTNRLLARKQHGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIR 238
           MSE   TIRTRKFMTNRLL RKQ  +      K N  ++    +  Q  +  S C     
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 239 FQDKLRGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 415
            +    GG+STGFALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV 
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119

Query: 416 GT 421
           GT
Sbjct: 120 GT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 55/122 (45%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
 Frame = +2

Query: 59  MSEGTATIRTRKFMTNRLLARKQHGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIR 238
           MSE   TIRTRKFMTNRLL RKQ  +      K N  ++    +  Q  +  +       
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 239 FQDKLRGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 415
            +    GG++TGFALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV 
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119

Query: 416 GT 421
           GT
Sbjct: 120 GT 121



 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +3

Query: 129 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNF 254
           MV D+LHPGK  +SK ++REKL +MYK     V  FG +T++
Sbjct: 23  MVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHY 64


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 302 DRVCRRSKRIQLTCHLEVCLETEY 231
           D VC+R  ++QL C  EV L+ E+
Sbjct: 197 DVVCQREAKVQLQCFNEVLLQAEH 220


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 311 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 409
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 208 LYILASFSRISVLLTVGFPG---CKTSQTMLLARQQSVGHELASANSRCSF 65
           ++ L SFS +S +   G PG   CK  +  L  R      +L+SA +  S+
Sbjct: 12  IFFLCSFSYVSSIKLCGIPGAPACKRREISLYKRATDTFPDLSSAIASTSY 62


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 91  ASANSRCSFTHFELFSII 38
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 177 EIREKLAKMYKVTPDVVFVFGFKTN 251
           +++E LAK YK+ P  +F   F T+
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTS 310


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 305 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 409
           +KK + +    +     +K   +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +2

Query: 311 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 412
           +F  KH L RHG  EKKR       R+Q   +  R KKV
Sbjct: 58  EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 353 EKKRPTRKQRKERKNRMKKVRGT 421
           E+ +P  ++ +E +NR+ ++RGT
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGT 112


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = +3

Query: 108 DCWRASSMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFK 245
           +C R    VC   +  K  ++++ + E L K+  +  D + ++  K
Sbjct: 640 NCLRVLEKVCKYSNIRKEIIARSNLHENLKKLLAIPHDKLRLYALK 685


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,569
Number of Sequences: 5004
Number of extensions: 39737
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)