Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30691
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 110 7e-25
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 107 5e-24
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 79 7e-20
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 30 0.97
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.3
01_01_1143 - 9064210-9065682 28 5.2
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 27 6.8
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.8
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 110 bits (264), Expect = 7e-25
Identities = 60/115 (52%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Frame = +2
Query: 77 TIRTRKFMTNRLLARKQHGLRCFTSRKTN-RQQDRDP*EARQNVQGYSRCSVRIRFQDKL 253
T+RTRKFMTNRLL+RKQ L + N + D A+ S C +F+
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 254 RGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 418
GGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 107 bits (257), Expect = 5e-24
Identities = 58/116 (50%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Frame = +2
Query: 77 TIRTRKFMTNRLLARKQHGLRCFTSRKTN--RQQDRDP*EARQNVQGYSRCSVRIRFQDK 250
T+RTRKFMTNRLL+RKQ L + N + + ++ V+ + C +F+
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKD-ANCIFVFKFRTH 69
Query: 251 LRGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 418
GGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 70 FGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 78.6 bits (185), Expect(2) = 7e-20
Identities = 44/89 (49%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +2
Query: 77 TIRTRKFMTNRLLARKQHGLRCFTSRKTN-RQQDRDP*EARQNVQGYSRCSVRIRFQDKL 253
T+RTRKFMTNRLL+RKQ L + N + D A+ S C +F+
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 254 RGGKSTGFALIYDTLDLAKKFEPKHRLAR 340
GGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 7e-20
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 341 HGLYEKKRPTRKQRKERKNRMKKVRG 418
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 30.3 bits (65), Expect = 0.97
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 138 DVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFEVASQLD 275
D+L + KT +R L Y + PD +FV K +V Q+D
Sbjct: 724 DILSIARSVCCKTSLRAALKAKYGILPDNIFVKAAKLCSDVGIQID 769
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 271 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 372
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_01_1143 - 9064210-9065682
Length = 490
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +2
Query: 143 FTSRK---TNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRGGKSTGFAL-IYDTLDLAK 310
+T RK +N D DP + Q Y DK+ G K GFAL +Y TLD AK
Sbjct: 264 YTQRKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTG-KPKGFALFVYKTLDSAK 322
Query: 311 K 313
K
Sbjct: 323 K 323
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/65 (23%), Positives = 36/65 (55%)
Frame = -2
Query: 223 TSGVTLYILASFSRISVLLTVGFPGCKTSQTMLLARQQSVGHELASANSRCSFTHFELFS 44
++ ++ YI++++ +S L+ G K + + R + ++ S ++ C H+E +S
Sbjct: 658 STALSQYIISTYGDMS--LSQALDGIKNNPSQWDWRIKDAMSKVLSWDAECYDLHWEAYS 715
Query: 43 IIRRL 29
+IR+L
Sbjct: 716 VIRKL 720
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 344 GLYEKKRPTRKQRKERKNRMKK 409
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,365,370
Number of Sequences: 37544
Number of extensions: 271483
Number of successful extensions: 796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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