Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30690
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 157 7e-39
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 157 7e-39
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 157 7e-39
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 78 7e-15
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 77 1e-14
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 75 8e-14
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 75 8e-14
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 0.004
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 0.004
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 38 0.012
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 38 0.012
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 38 0.012
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 1.3
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 1.3
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z82283-3|CAB05283.1| 485|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 3.1
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 3.1
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 3.1
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 3.1
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 9.5
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 157 bits (382), Expect = 7e-39
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = +1
Query: 250 NQMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 429
+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVG
Sbjct: 172 SNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVG 231
Query: 430 RVETGVLKPGTIVVFAPANITTEVKS 507
RVETG++KPG +V FAP N+TTEVKS
Sbjct: 232 RVETGIIKPGMVVTFAPQNVTTEVKS 257
Score = 153 bits (370), Expect = 2e-37
Identities = 68/87 (78%), Positives = 76/87 (87%)
Frame = +3
Query: 510 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 689
EMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQ
Sbjct: 259 EMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQ 318
Query: 690 ISNGYTPVLDCHTAHIACKFAEIKEKL 770
ISNGYTPVLDCHTAHIACKF E+KEK+
Sbjct: 319 ISNGYTPVLDCHTAHIACKFNELKEKV 345
Score = 93.9 bits (223), Expect = 1e-19
Identities = 43/59 (72%), Positives = 49/59 (83%)
Frame = +2
Query: 77 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 253
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSS 172
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +2
Query: 758 QRKVDRRTGKSTEVNPKSIKSGDAAI 835
+ KVDRRTGK E PK +KSGDA I
Sbjct: 342 KEKVDRRTGKKVEDFPKFLKSGDAGI 367
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 157 bits (382), Expect = 7e-39
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = +1
Query: 250 NQMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 429
+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVG
Sbjct: 206 SNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVG 265
Query: 430 RVETGVLKPGTIVVFAPANITTEVKS 507
RVETG++KPG +V FAP N+TTEVKS
Sbjct: 266 RVETGIIKPGMVVTFAPQNVTTEVKS 291
Score = 153 bits (370), Expect = 2e-37
Identities = 68/87 (78%), Positives = 76/87 (87%)
Frame = +3
Query: 510 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 689
EMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQ
Sbjct: 293 EMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQ 352
Query: 690 ISNGYTPVLDCHTAHIACKFAEIKEKL 770
ISNGYTPVLDCHTAHIACKF E+KEK+
Sbjct: 353 ISNGYTPVLDCHTAHIACKFNELKEKV 379
Score = 140 bits (340), Expect = 8e-34
Identities = 68/84 (80%), Positives = 73/84 (86%)
Frame = +2
Query: 2 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 181
FEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EVS +IKKIG
Sbjct: 123 FEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIG 182
Query: 182 YNPAAVAFVPISGWHGDNMLEPST 253
YNP AV FVPISG++GDNMLE S+
Sbjct: 183 YNPKAVPFVPISGFNGDNMLEVSS 206
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +2
Query: 758 QRKVDRRTGKSTEVNPKSIKSGDAAI 835
+ KVDRRTGK E PK +KSGDA I
Sbjct: 376 KEKVDRRTGKKVEDFPKFLKSGDAGI 401
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 157 bits (382), Expect = 7e-39
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = +1
Query: 250 NQMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 429
+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVG
Sbjct: 206 SNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVG 265
Query: 430 RVETGVLKPGTIVVFAPANITTEVKS 507
RVETG++KPG +V FAP N+TTEVKS
Sbjct: 266 RVETGIIKPGMVVTFAPQNVTTEVKS 291
Score = 153 bits (370), Expect = 2e-37
Identities = 68/87 (78%), Positives = 76/87 (87%)
Frame = +3
Query: 510 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 689
EMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQ
Sbjct: 293 EMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQ 352
Query: 690 ISNGYTPVLDCHTAHIACKFAEIKEKL 770
ISNGYTPVLDCHTAHIACKF E+KEK+
Sbjct: 353 ISNGYTPVLDCHTAHIACKFNELKEKV 379
Score = 140 bits (340), Expect = 8e-34
Identities = 68/84 (80%), Positives = 73/84 (86%)
Frame = +2
Query: 2 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 181
FEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EVS +IKKIG
Sbjct: 123 FEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIG 182
Query: 182 YNPAAVAFVPISGWHGDNMLEPST 253
YNP AV FVPISG++GDNMLE S+
Sbjct: 183 YNPKAVPFVPISGFNGDNMLEVSS 206
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +2
Query: 758 QRKVDRRTGKSTEVNPKSIKSGDAAI 835
+ KVDRRTGK E PK +KSGDA I
Sbjct: 376 KEKVDRRTGKKVEDFPKFLKSGDAGI 401
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 78.2 bits (184), Expect = 7e-15
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Frame = +2
Query: 2 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 181
FE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +++ +++K+G
Sbjct: 225 FETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLG 284
Query: 182 YNPAA-VAFVPISGWHGDNMLEPSTKCLGSRDGRW 283
+NP + +VP SG G + + T GS +G W
Sbjct: 285 FNPKTDITYVPCSGLTGAFIKDRPT---GS-EGNW 315
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +3
Query: 501 QVWEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 680
Q+W E + V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H
Sbjct: 383 QIWADDVET-ERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEH 440
Query: 681 PGQISNGYTPVLDCHTA 731
I++GY+ VL +A
Sbjct: 441 RSIIASGYSCVLHIQSA 457
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 307 GKCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 480
G C IE +D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMP 374
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 77.4 bits (182), Expect = 1e-14
Identities = 59/146 (40%), Positives = 72/146 (49%)
Frame = +2
Query: 2 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 181
FEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++ + +
Sbjct: 123 FEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR-----LFHLS 174
Query: 182 YNPAAVAFVPISGWHGDNMLEPSTKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPL 361
+P + L C GSRDG + RK L E S +L PS H A L
Sbjct: 175 QSPDSTE---------TTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQL 225
Query: 362 TSPCVFPCKTYTKSVVLVPCPSAELK 439
T VF + T+S L P S L+
Sbjct: 226 TDHSVFHSRMCTRSEELEPSQSDVLR 251
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 74.5 bits (175), Expect = 8e-14
Identities = 37/82 (45%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKI 178
FE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++
Sbjct: 286 FETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQA 343
Query: 179 GYNPAAVAFVPISGWHGDNMLE 244
G++ FVP+SG+ G+N+++
Sbjct: 344 GFSKP--KFVPVSGFTGENLIK 363
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 304 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAP 480
DG CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 430
Query: 481 ANITT 495
T
Sbjct: 431 VTAAT 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 74.5 bits (175), Expect = 8e-14
Identities = 37/82 (45%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKI 178
FE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++
Sbjct: 304 FETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQA 361
Query: 179 GYNPAAVAFVPISGWHGDNMLE 244
G++ FVP+SG+ G+N+++
Sbjct: 362 GFSKP--KFVPVSGFTGENLIK 381
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 304 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAP 480
DG CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 448
Query: 481 ANITT 495
T
Sbjct: 449 VTAAT 453
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 259 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 429
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 430 RVETGVLKPG 459
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 29 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 208
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N A +
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 259 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 429
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 430 RVETGVLKPG 459
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 29 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 208
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N A +
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 37.5 bits (83), Expect = 0.012
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 295 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TI 465
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 284
Query: 466 VVFAPANITTEVKS 507
+ T VKS
Sbjct: 285 EIVGGTKDGTTVKS 298
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 29 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 184
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 202
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +3
Query: 510 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 689
E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 304 ESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--S 360
Query: 690 ISNGYTPVLDCHTAHI 737
TP+ + + H+
Sbjct: 361 EGGAKTPIANYFSEHV 376
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 37.5 bits (83), Expect = 0.012
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 295 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TI 465
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 285
Query: 466 VVFAPANITTEVKS 507
+ T VKS
Sbjct: 286 EIVGGTKDGTTVKS 299
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 29 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 184
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +3
Query: 510 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 689
E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 305 ESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--S 361
Query: 690 ISNGYTPVLDCHTAHI 737
TP+ + + H+
Sbjct: 362 EGGAKTPIANYFSEHV 377
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 37.5 bits (83), Expect = 0.012
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 295 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TI 465
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 285
Query: 466 VVFAPANITTEVKS 507
+ T VKS
Sbjct: 286 EIVGGTKDGTTVKS 299
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 29 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 184
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +3
Query: 510 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 689
E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 305 ESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--S 361
Query: 690 ISNGYTPVLDCHTAHI 737
TP+ + + H+
Sbjct: 362 EGGAKTPIANYFSEHV 377
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 367 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 486
P + D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 412
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 367 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 486
P + D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 411
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 29 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY--NPAAVA 202
QT EH LLA ++I+ +NK D E + + E K+V +K +G N V
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVE 167
Query: 203 FVPISGWHGDNMLEPSTKCLGSR 271
G+ + ML+ + SR
Sbjct: 168 MSLADGYFKEEMLQNLKLAIESR 190
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 337 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKS 507
I P R + + + + I G GTV G V GVL+ T + F N VK+
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKT 247
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 337 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKS 507
I P R + + + + I G GTV G V GVL+ T + F N VK+
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKT 206
>Z82283-3|CAB05283.1| 485|Caenorhabditis elegans Hypothetical
protein T23G4.3 protein.
Length = 485
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 101 DSTEPPYSEP-RFEEIKKEVSSYIKKIGYNPAAVAFV--PISGWHGDNMLEPSTKCLGSR 271
D TE + P +++E++KE+ + + + AA A P+ + L + K + R
Sbjct: 78 DCTEGAEATPEQWKELEKELDKVVAFMKDSEAAKATETDPVKRYKNLCQLSMTLKIMSPR 137
Query: 272 DGRWSVRKAKLTENASLKL 328
DG W + K TE L +
Sbjct: 138 DGGWKILHDKRTEAEQLAI 156
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 159 PHTSRRLATTQLLSLSCPFLD 221
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 159 PHTSRRLATTQLLSLSCPFLD 221
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 159 PHTSRRLATTQLLSLSCPFLD 221
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 159 PHTSRRLATTQLLSLSCPFLD 221
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 664 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 533
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,715,257
Number of Sequences: 27780
Number of extensions: 510444
Number of successful extensions: 1709
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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