Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30688
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 95 2e-20
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 79 8e-16
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 2.5
10_07_0170 - 13777590-13777973,13778073-13778339 27 4.4
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628... 27 4.4
10_01_0039 + 447573-448911,451247-451296,451322-451423 27 5.9
06_03_0451 - 20925100-20926734 27 5.9
05_05_0358 - 24388718-24388926,24390069-24390540 27 5.9
05_05_0226 + 23442971-23443857,23444209-23446324 27 5.9
02_02_0391 - 9646256-9646528 27 5.9
11_01_0551 + 4361640-4363386,4363443-4363687 26 7.7
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 94.7 bits (225), Expect = 2e-20
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
Frame = +1
Query: 4 PFRQWYESHYTLPLGRKKGAKLT--------EAEEAIINKKRSQKTARKYLARQRLAKVE 159
PF+QWY +HY + +GRKK A E E A K+S RK RQ+ ++
Sbjct: 109 PFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLD 168
Query: 160 GALEEQFHTGRLLACVASRPGQCGRADGYILEAK 261
+EEQF +GRLLAC++SRPGQCGRADGYILE K
Sbjct: 169 SHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3
Query: 249 LRGKELEFYLRKIKSKRAK 305
L GKELEFY++K++ K+ K
Sbjct: 199 LEGKELEFYMKKLQRKKGK 217
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 79.4 bits (187), Expect = 8e-16
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Frame = +1
Query: 4 PFRQWYESHYTLPLGRKKGA-------------------------KLTEAEEAIINKKRS 108
PF+QWY +HY + +GRKK A K +AE K+S
Sbjct: 109 PFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKS 168
Query: 109 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEAK 261
RK RQ+ ++ +EEQF +GRLLAC++SRPGQCGRADGYILE K
Sbjct: 169 NHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 219
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3
Query: 249 LRGKELEFYLRKIKSKRAK 305
L GKELEFY++K++ K+ K
Sbjct: 216 LEGKELEFYMKKLQRKKGK 234
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 55 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 186
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>10_07_0170 - 13777590-13777973,13778073-13778339
Length = 216
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 106 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 222
+Q ++ A AK+EGA + + GR+ +A PG
Sbjct: 94 AQYILEQFRATTGCAKIEGAAKSMYAAGRVRMAMAPEPG 132
>03_05_0783 -
27662178-27662237,27662659-27662700,27662791-27662892,
27662991-27663147,27663230-27663307,27663391-27663446,
27663557-27663634,27663736-27663867,27663943-27664078,
27664252-27664403,27665317-27665391,27665476-27665535,
27665865-27665944,27666392-27666462,27666549-27666689,
27667467-27667555,27668657-27668731,27669303-27669401,
27669526-27669572,27669654-27669875,27671485-27671557,
27671650-27671823
Length = 732
Score = 27.1 bits (57), Expect = 4.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 228 WSRRWLHLRGKELEFYLRK 284
W R +LH +GK ++FY K
Sbjct: 344 WRRTYLHKKGKRVKFYCSK 362
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 162 CSRRAIPHGAFAGLRGESPRSVWSRRWLHL 251
C A+P+ + P S+ RRWLH+
Sbjct: 282 CRTAALPYAPHRRVHAYLPLSMHGRRWLHI 311
>06_03_0451 - 20925100-20926734
Length = 544
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 174 LF*STLNLSKTLPCQVFSCCLLTSLLVDN 88
++ S N S+ LP + C LL L++DN
Sbjct: 394 IYASNNNFSRNLPANLGDCVLLQELVLDN 422
>05_05_0358 - 24388718-24388926,24390069-24390540
Length = 226
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 191 VCWLAWRVAQVSVVAPMVTS*RQRTRVLSKKDQV*EGEV 307
+CW+ WRVA S + + T + K +V + EV
Sbjct: 116 ICWIRWRVATCSRPSVLAREVETETEAVEKSVRVKDLEV 154
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 82 EAIINKKRSQK-TARKYLARQRLAKVEGALEEQFHTGRLLACVAS 213
E ++NK SQ A+ RL A FH+G L CVAS
Sbjct: 521 EFLLNKSLSQIFIAKSSRDHPRLGVNTNACHLSFHSGELTECVAS 565
>02_02_0391 - 9646256-9646528
Length = 90
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 244 NHRRDHTDLGDSPRKPANAPCG 179
N RR H D+ D PR+ CG
Sbjct: 29 NTRRQHIDIRDKPRQTQYGACG 50
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 52 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 177
+ G+ T+A E+I KK+ + +K + + A V A EE+
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEE 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,923
Number of Sequences: 37544
Number of extensions: 129954
Number of successful extensions: 495
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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