Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30688
(359 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 141 7e-34
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 141 7e-34
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 141 7e-34
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 141 7e-34
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 141 7e-34
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 94 1e-19
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 1.4
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 1.4
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 1.4
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 1.4
BC017312-1|AAH17312.1| 442|Homo sapiens matrix-remodelling asso... 30 1.9
BC006213-1|AAH06213.1| 442|Homo sapiens matrix-remodelling asso... 30 1.9
AL139287-18|CAI23189.1| 442|Homo sapiens matrix-remodelling ass... 30 1.9
AL139287-17|CAI23188.1| 450|Homo sapiens matrix-remodelling ass... 30 1.9
AK027269-1|BAB55010.1| 450|Homo sapiens protein ( Homo sapiens ... 30 1.9
AB052096-1|BAD05132.1| 442|Homo sapiens limitrin protein. 30 1.9
BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein. 29 3.3
BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein. 29 3.3
AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein. 29 3.3
AK223187-1|BAD96907.1| 201|Homo sapiens hypothetical protein FL... 29 4.3
BC014311-1|AAH14311.1| 376|Homo sapiens FCHO2 protein protein. 29 5.7
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 141 bits (341), Expect = 7e-34
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = +1
Query: 1 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 180
TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF
Sbjct: 107 TPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQF 166
Query: 181 HTGRLLACVASRPGQCGRADGYILEAK 261
G+LLAC+ASRPGQCGRADGY+LE K
Sbjct: 167 QQGKLLACIASRPGQCGRADGYVLEGK 193
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 249 LRGKELEFYLRKIKSKRAK 305
L GKELEFYLRKIK+++ K
Sbjct: 190 LEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 141 bits (341), Expect = 7e-34
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = +1
Query: 1 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 180
TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF
Sbjct: 107 TPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQF 166
Query: 181 HTGRLLACVASRPGQCGRADGYILEAK 261
G+LLAC+ASRPGQCGRADGY+LE K
Sbjct: 167 QQGKLLACIASRPGQCGRADGYVLEGK 193
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 249 LRGKELEFYLRKIKSKRAK 305
L GKELEFYLRKIK+++ K
Sbjct: 190 LEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 141 bits (341), Expect = 7e-34
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = +1
Query: 1 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 180
TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF
Sbjct: 87 TPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQF 146
Query: 181 HTGRLLACVASRPGQCGRADGYILEAK 261
G+LLAC+ASRPGQCGRADGY+LE K
Sbjct: 147 QQGKLLACIASRPGQCGRADGYVLEGK 173
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 249 LRGKELEFYLRKIKSKRAK 305
L GKELEFYLRKIK+++ K
Sbjct: 170 LEGKELEFYLRKIKARKGK 188
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 141 bits (341), Expect = 7e-34
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = +1
Query: 1 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 180
TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF
Sbjct: 107 TPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQF 166
Query: 181 HTGRLLACVASRPGQCGRADGYILEAK 261
G+LLAC+ASRPGQCGRADGY+LE K
Sbjct: 167 QQGKLLACIASRPGQCGRADGYVLEGK 193
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 249 LRGKELEFYLRKIKSKRAK 305
L GKELEFYLRKIK+++ K
Sbjct: 190 LEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 141 bits (341), Expect = 7e-34
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = +1
Query: 1 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 180
TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF
Sbjct: 107 TPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQF 166
Query: 181 HTGRLLACVASRPGQCGRADGYILEAK 261
G+LLAC+ASRPGQCGRADGY+LE K
Sbjct: 167 QQGKLLACIASRPGQCGRADGYVLEGK 193
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 249 LRGKELEFYLRKIKSKRAK 305
L GKELEFYLRKIK+++ K
Sbjct: 190 LEGKELEFYLRKIKARKGK 208
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = +1
Query: 67 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 246
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 247 ILEAK 261
+LE K
Sbjct: 61 VLEGK 65
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 249 LRGKELEFYLRKIKSKRAK 305
L GKELEFYLRKIK+++ K
Sbjct: 62 LEGKELEFYLRKIKARKGK 80
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 46 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 192
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 46 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 192
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 46 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 192
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 46 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 192
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC017312-1|AAH17312.1| 442|Homo sapiens matrix-remodelling
associated 8 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 186 GAFAGLRGESPRSVWSRRWLHLRGKELEFYLR 281
GA A LR +SPR VW++ LH R + L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>BC006213-1|AAH06213.1| 442|Homo sapiens matrix-remodelling
associated 8 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 186 GAFAGLRGESPRSVWSRRWLHLRGKELEFYLR 281
GA A LR +SPR VW++ LH R + L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>AL139287-18|CAI23189.1| 442|Homo sapiens matrix-remodelling
associated 8 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 186 GAFAGLRGESPRSVWSRRWLHLRGKELEFYLR 281
GA A LR +SPR VW++ LH R + L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>AL139287-17|CAI23188.1| 450|Homo sapiens matrix-remodelling
associated 8 protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 186 GAFAGLRGESPRSVWSRRWLHLRGKELEFYLR 281
GA A LR +SPR VW++ LH R + L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>AK027269-1|BAB55010.1| 450|Homo sapiens protein ( Homo sapiens
cDNA FLJ14363 fis, clone HEMBA1000719. ).
Length = 450
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 186 GAFAGLRGESPRSVWSRRWLHLRGKELEFYLR 281
GA A LR +SPR VW++ LH R + L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>AB052096-1|BAD05132.1| 442|Homo sapiens limitrin protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 186 GAFAGLRGESPRSVWSRRWLHLRGKELEFYLR 281
GA A LR +SPR VW++ LH R + L + LR
Sbjct: 47 GARAVLRCQSPRMVWTQDRLHDRQRVLHWDLR 78
>BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein.
Length = 446
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 215 RLATQASKRPVWNCSSRAPSTL 150
R A AS+RP+W+ S RAPS L
Sbjct: 329 RSAPAASERPLWDTSLRAPSCL 350
>BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein.
Length = 391
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 215 RLATQASKRPVWNCSSRAPSTL 150
R A AS+RP+W+ S RAPS L
Sbjct: 69 RSAPAASERPLWDTSLRAPSCL 90
>AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein.
Length = 634
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 215 RLATQASKRPVWNCSSRAPSTL 150
R A AS+RP+W+ S RAPS L
Sbjct: 506 RSAPAASERPLWDTSLRAPSCL 527
>AK223187-1|BAD96907.1| 201|Homo sapiens hypothetical protein
FLJ11749 variant protein.
Length = 201
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 46 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 192
GRKK +++TE +AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQGKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC014311-1|AAH14311.1| 376|Homo sapiens FCHO2 protein protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 49 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 159
+K+GA E E+A + K++ T + Y+ + LAK +
Sbjct: 152 KKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKAD 188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,860,428
Number of Sequences: 237096
Number of extensions: 687691
Number of successful extensions: 1783
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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