Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30688
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   121   2e-28
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z29115-3|CAA82361.1|  347|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    27   5.2  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  121 bits (291), Expect = 2e-28
 Identities = 55/86 (63%), Positives = 67/86 (77%)
 Frame = +1

Query: 4   PFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFH 183
           PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L EQF+
Sbjct: 108 PFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFN 167

Query: 184 TGRLLACVASRPGQCGRADGYILEAK 261
           TGRLLA ++S PGQ G+A+GYILE K
Sbjct: 168 TGRLLARISSSPGQVGQANGYILEGK 193



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +3

Query: 213 SPRSVWSRRWLHLRGKELEFYLRKIKSKRAK 305
           SP  V       L GKEL+FYLRKI++K+AK
Sbjct: 178 SPGQVGQANGYILEGKELDFYLRKIRAKKAK 208


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +1

Query: 49  RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 174
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 182 WNCSSRAPSTLARRCLA 132
           W C +RAP+T+  RC A
Sbjct: 555 WTCQTRAPTTIILRCPA 571


>Z29115-3|CAA82361.1|  347|Caenorhabditis elegans Hypothetical
           protein T26G10.4 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 52  KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCG 231
           KK A L +A E   N+K   +   K + R    +V  AL+ +FHT +L+    SR  Q  
Sbjct: 257 KKLAVLVQATEDS-NEKLFTEDGVKKMQRAMNEQVSRALKHRFHTTKLVKSEISRVVQMH 315

Query: 232 RADG-YILEAKNSSSI*ERSSLRGRSNV 312
            A   ++    N S    R   + R N+
Sbjct: 316 PASNKFVARGGNLSLACHRFVHKARLNL 343


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -2

Query: 313 THYFALLDLIFLR*NSSSLPLRCNHRRDHTDLGDSPRKPANAPCGIALLEHP 158
           +H F+L   I  +            RR  TD+G  PR  A+A   + L   P
Sbjct: 18  SHKFSLTSHILRKAKKRETMDSAERRRSETDIGGGPRNSADARPSLDLSSDP 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,227,120
Number of Sequences: 27780
Number of extensions: 98086
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)