Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30688
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   152   1e-39
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.4  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  152 bits (368), Expect = 1e-39
 Identities = 68/87 (78%), Positives = 75/87 (86%)
 Frame = +1

Query: 1   TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 180
           TPFRQWYE HY LPLGRK+GAKLTEAEE ++NKKRS+K   KY ARQR AKVE ALEEQF
Sbjct: 107 TPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQF 166

Query: 181 HTGRLLACVASRPGQCGRADGYILEAK 261
            TGR+LAC++SRPGQCGR DGYILE K
Sbjct: 167 ATGRVLACISSRPGQCGREDGYILEGK 193



 Score = 36.3 bits (80), Expect = 1e-04
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +3

Query: 249 LRGKELEFYLRKIKSKRAK 305
           L GKELEFY+R+IKSK+AK
Sbjct: 190 LEGKELEFYMRRIKSKKAK 208


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 231 SRRWLHLRGKEL 266
           SRR L+LRG+E+
Sbjct: 728 SRRMLYLRGREV 739


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,937
Number of Sequences: 438
Number of extensions: 1233
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)