Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30687
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   2.5  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   4.4  
06_03_0165 - 17399535-17400178,17400378-17400522                       28   7.6  
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522...    28   7.6  

>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 101 DLKSQLEGFNTSCLRDVDTNEKIVL 175
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 63  TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 155
           TLPP + SP SP T   SSK  TP+ S  S+
Sbjct: 31  TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61


>06_03_0165 - 17399535-17400178,17400378-17400522
          Length = 262

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 557 YNGNPAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 664
           ++G   W   T    G YS   D +RLT I SE  P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256


>02_05_0599 -
           30251708-30251815,30251864-30251984,30252068-30252215,
           30252303-30252480,30252587-30252625,30252704-30252799,
           30252879-30253030,30253336-30253722,30253836-30253940,
           30254083-30254098
          Length = 449

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 273 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-DVRKEPAP 404
           GEEPA      R+G G    P +HRE +  SH +  +G ++R+   P
Sbjct: 6   GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,391,625
Number of Sequences: 37544
Number of extensions: 439764
Number of successful extensions: 1222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)