Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30687
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    54   2e-07
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    29   3.0  
AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    29   5.2  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z48009-5|CAA88086.1|  329|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = +1

Query: 256 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 432
           K  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QEK
Sbjct: 25  KKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +1

Query: 262 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 435
           T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN LP+   + +EK+
Sbjct: 65  TPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 71  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 244
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE FD
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFD 58



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +2

Query: 113 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 241
           ++E F+++ L      EKIVLPSA+D+  EK    L D I  F
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNF 95



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 68  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 208
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 364 KLKHTETCEKNPLPTKDVIEQEK 432
           +LK  ET EKN LPTK+ + +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEK 45



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +1

Query: 247 EPAKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 384
           E  K TET EKN LP    +  EK     L    +FD + L H ET
Sbjct: 98  ENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 312 GEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKGRH*AREISLNHY 449
           G+ + Q P+  +  RS   +  GD+   P P      A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365


>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 532 ITSFIFVFVQWQPCLGNGDVQQPRILFKS*R*VTPYANKQRVDAINRSNTDN 687
           ITSFI  F++ + C+   ++   R+LF     + P+ N + ++ I  S TDN
Sbjct: 131 ITSFIN-FLKAKDCIHVKEIHFNRLLFDDILSILPFFNAKVLENIKLSETDN 181


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 253 AKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 357
           +KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 191 SKHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>Z48009-5|CAA88086.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.7 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 205 LLSGNVFSRRKHNLFIGVDVTETAGVEAFEL 113
           LL  N+FS   H +F+G+ + E   +  F+L
Sbjct: 58  LLYQNLFSANIHQIFLGITIVERLNIAFFKL 88


>U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical
           protein T26C11.4 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 249 ASEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKGRH*AR 428
           AS A  D+G     GQ  +RS  G++      RE  S    + G  R++      R  AR
Sbjct: 198 ASNAGYDNGSRHCRGQDSFRS--GRDDAARDQREFLSRSMRSSGSQRQDQGFQSERDEAR 255

Query: 429 EISLNH 446
           +  + H
Sbjct: 256 DRYIEH 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,631,595
Number of Sequences: 27780
Number of extensions: 379708
Number of successful extensions: 1123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)