Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30685
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.87
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 29 0.87
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.87
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 2.0
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.6
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 27 3.5
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 4.6
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 26 4.6
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 6.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 6.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 6.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.1
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 25 8.1
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.7 bits (61), Expect = 0.87
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2
Query: 278 IQVKETVKSIDGYEIIDETEVFDSNV-KTDKA--KEQKIPCKPSSRNVSPTKKSNIPGPS 448
+Q T + ++ ET V K DKA ++ K+ KPSS PT S +
Sbjct: 446 VQEAVTAPTETAHDFSKETTTASKRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSA 505
Query: 449 KAEKTPDSPTKSRSISPKXP 508
++ K P+K S +P P
Sbjct: 506 QSSKHARRPSKQAS-APSSP 524
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 28.7 bits (61), Expect = 0.87
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 371 KEQKIPCKPSS--RNVSPTKKSNIPGPSKAEKTPDSPTKSRSISPKXPFLKDL 523
+++ P P+S RN S GP A TP SPT + + K P L L
Sbjct: 246 RKKPSPLSPNSSIRNREGGNGSYFDGPLTASPTPSSPTGTPNSMSKSPSLSSL 298
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 0.87
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +3
Query: 63 SEEPRQLRTPSPVKKITSTKEFSADF--IMSEREQEVLNKVQK--SLRKLSPER 212
S + +QL+ V K+TS +E + +F + E+E+++ NK ++ LRKL E+
Sbjct: 475 SAQEKQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQ 528
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 395 PSSRNVSPT-KKSNIPGPSKAEKTPDSPTKSRSI 493
P RNV P K+S+I PS+ PD+P S+
Sbjct: 543 PGHRNVPPILKRSSIGTPSQQAYFPDAPHNCHSV 576
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 189 LRKLSPERKSVSPIREKSPS 248
LRKLSP V+PIR K+P+
Sbjct: 209 LRKLSPIELPVTPIRRKTPT 228
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 353 VKTDKAKEQKIPCKPSSRNVSPTKKSNIPGPSKAEKTPDSPTKSRSISPKXPFLKD 520
++TD + I P+ R V+ + N P K PD +K+ SP P ++
Sbjct: 599 IETDSSPSDTISSSPTVRAVNLSPSKNQKPPKILTKIPDIFSKAGKKSPILPTFQE 654
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 3.5
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Frame = +3
Query: 6 SPRPSTSPLRQVPNEEHTKSEEPRQLRTPSPVKKITSTKEFSADFIMSEREQEVLNKVQK 185
+P ST+ Q P E+ + P K E AD +M ++ N +QK
Sbjct: 6 NPFLSTATSSQTPQEDGVYTSSLHNSNNPFLAPKT----ERVADPVMESMADDLFNSIQK 61
Query: 186 -------SLRKLSPERKSVSPIREKSPSKM 254
S SP +KS + E+S S M
Sbjct: 62 KKEPSPASSASASPVKKSAEALAERSNSSM 91
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 269 LDIIQVKETVKSIDGYEIIDETEVF 343
+ +I +++ ++ + G EIIDET+V+
Sbjct: 367 IGVITLEDIIEELIGEEIIDETDVY 391
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 142 IKSALNSLVDVIFLTGEGVRSCLGSS--DFVCSSFGTC 35
I S +SL I TG+G +SC S+ + C+ G C
Sbjct: 281 IHSDTSSLASSIIQTGDGTQSCDESTYIELACNLVGRC 318
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 407 NVSPTKKSNIPGPSKAEKTPDSPTKSRSISPKXPFLKDLDPHKY 538
++ PT S+IP ++ T +P+ S S +P P L + Y
Sbjct: 8 SMQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSY 51
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 6.1
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Frame = +2
Query: 332 TEVFDSNVKTDKAKEQKIPCKPSSRNVSPTKKSNIPGPSKAEKTPDSPTKSRS------- 490
TEV + + K+ PS +VS KS P P A + + T++
Sbjct: 305 TEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQSASTETAQDLDFLTP 364
Query: 491 --ISPKXPFLKDLDP 529
+S PFL DL P
Sbjct: 365 PRLSVNNPFLSDLYP 379
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 88 VRSCLGSSDFVCSSFGTCRNGDVDGL 11
+RS + SD V +S+ CRN DVD L
Sbjct: 1459 IRSKMKKSDVVVTSYDICRN-DVDEL 1483
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 8.1
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 1/114 (0%)
Frame = +2
Query: 200 FTREKIGVSNP*EESLENAS-LHDLDIIQVKETVKSIDGYEIIDETEVFDSNVKTDKAKE 376
F+ + SNP +E S + I Q + +I +DET + +
Sbjct: 26 FSSQNSTTSNPELSHIEKESNASSIIISQQPLSPSNISSAAPLDETHIA-TKASASLRNN 84
Query: 377 QKIPCKPSSRNVSPTKKSNIPGPSKAEKTPDSPTKSRSISPKXPFLKDLDPHKY 538
P PS + S + S++ EK PDS + PF + +D ++
Sbjct: 85 NVSPHIPSPSSFSSSSSSDLDKSMLDEKHPDSEDITAVSLSTPPFPESIDVARF 138
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 8.1
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 296 VKSIDGYEIIDETEVFDSNVKTDKAKEQKIPCKPSSRNVSPTKKSNIPGPSKAEKTPDSP 475
V+++D Y+ + E E S TD A + IP KP +++ T K + P+ P
Sbjct: 519 VETLDSYQTLAELE--PSWNLTD-ADIRAIPAKPLFFDLAITYLGQQTSFDKKKAQPEKP 575
Query: 476 TKSRSISPK 502
S S PK
Sbjct: 576 VTSVSKEPK 584
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,757
Number of Sequences: 5004
Number of extensions: 51606
Number of successful extensions: 208
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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