Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30685
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 505 TISERPRSPQVPKVGYAKPKEMTP 576
           ++S  PR P  P++ + K K   P
Sbjct: 134 SLSSPPREPGTPRINFTKLKRHHP 157


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 82  SCLGSSDFVCSSFGTCRNGD 23
           S LGS  ++    G+CR  D
Sbjct: 261 SWLGSGQYISDFVGSCRKTD 280


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 82  SCLGSSDFVCSSFGTCRNGD 23
           S LGS  ++    G+CR  D
Sbjct: 299 SWLGSGQYISDFVGSCRKTD 318


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 374 EQKIPCKPSSRNVSPTKKSNIPGPSKAEKTPDS 472
           E+++P  P  R         +P P     TPDS
Sbjct: 634 EERLPPLPPKRIRKMPSMPLLPRPISCHTTPDS 666


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 377 QKIPCKPSSRNVSPTKKSNIPGPSKAEKTPDSPTKSRSISPKXPFLKDLDPHKYLKSVML 556
           + I CK   +  + T +    G   A +   SP+ S  +  +   + D DP    +  + 
Sbjct: 74  KSIICKCFCKRRTNTLRRGSDGSQLAMRNDRSPSYSMQVPQQGASIDDSDPDPSSEPTVH 133

Query: 557 SQ 562
           SQ
Sbjct: 134 SQ 135


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +2

Query: 377 QKIPCKPSSRNVSPTKKSNIPGPSKAEKTPDSPTKSRSISPKXPFLKDLDPHKYLKSVML 556
           + I CK   +  + T +    G   A +   SP+ S  +  +   + D DP    +  + 
Sbjct: 522 KSIICKCFCKRRTNTLRRGSDGSQLAMRNDRSPSYSMQVPQQGASIDDSDPDPSSEPTVH 581

Query: 557 SQ 562
           SQ
Sbjct: 582 SQ 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,830
Number of Sequences: 438
Number of extensions: 3578
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)