Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30684
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    27   1.5  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   1.9  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   3.4  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   5.9  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   5.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   5.9  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   7.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    24   7.8  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 301 YSMYTYRQAILARSVFTCVKMNKK 230
           YS++ YR+ IL   VF  + +N+K
Sbjct: 63  YSVWNYRREILLNDVFPKISLNEK 86


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 52  LHGLFYLVFH--YNYIKHNLFRCEDSKI 129
           LH  FYL+FH  +N +K +  R   S+I
Sbjct: 118 LHSSFYLLFHEPFNILKGSTLRFSQSRI 145


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 46  CYLHGLFYLVFHYNYIKHNLFRCEDSKI--GMLNTLLLTGVIVILWPRLLVINPERSNMA 219
           C  H LF+  F    +   ++  +  ++   ++   +L  ++  +W  LLVI+ ++ ++A
Sbjct: 418 CSDHVLFHAGFASASLLRLIYAAKTKEVDTSIVQPKVLNDLVTKIWKWLLVISVDQYHLA 477

Query: 220 TPLLSY 237
           T   +Y
Sbjct: 478 TKFANY 483


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 368 EHLIKRRNIIFAHN*VITIIHLLLYVYV*TSYSGAICLHLREN 240
           +HLIKR         +  ++   + + V T+ S  +C H REN
Sbjct: 317 QHLIKRYTKFQRVFFLTNVLRSAVIIIVGTAISYGVCKHRREN 359


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  LTFGYCYLHGLFYLVFHYNYIK 96
           L  G+C  + LF  + HY++IK
Sbjct: 861 LMSGWCIFYTLFAHLLHYDFIK 882


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 215  WPLHSFLIHFHAGEDRSRQNSLSIRIHRVI 304
            W  HS  +HF   E RS++N L    HR++
Sbjct: 2038 WVPHSDTLHFLIKEFRSKRNILLNLEHRMM 2067


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 212 IWPLHSFLIHFH 247
           +W +H FL HFH
Sbjct: 590 LWEIHPFLNHFH 601


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 166 QLLPLKAVYSACLSYYLHTETNY 98
           QL+ LK+ +S  +SY L  + NY
Sbjct: 544 QLMTLKSSFSEVMSYELKDDDNY 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,599
Number of Sequences: 5004
Number of extensions: 31655
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)