Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30684
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0707 + 19645471-19646112                                         31   0.46 
03_02_0574 + 9575496-9575517,9575636-9576418,9576754-9577163,957...    27   4.3  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   7.5  

>09_04_0707 + 19645471-19646112
          Length = 213

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 190 RATGARG*QL-LPLKAVYSACLSYYLHTETNYVLYNYSEILN 68
           R+  ARG QL LP+K +Y++ +   LH+     LY  S++L+
Sbjct: 26  RSRDARGRQLALPIKLLYTSTMPVVLHSAAVSSLYTVSQLLH 67


>03_02_0574 +
           9575496-9575517,9575636-9576418,9576754-9577163,
           9577246-9578079
          Length = 682

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 212 LERSGFMTSNRGQRMTITPVKSSVFSMPILLSSH 111
           + R G + S+ G+R+  +P  S   S P+L+ SH
Sbjct: 39  VRRPGLVMSHSGKRLDQSPAASPSPSRPVLVMSH 72


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 EYTAFNGSNCHPLAPVARHKS 200
           EY   +GS C  LAP  RH S
Sbjct: 661 EYATIDGSECTELAPSIRHLS 681


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,049
Number of Sequences: 37544
Number of extensions: 175435
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)