Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30684
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29644-1|CAA82752.1|  540|Caenorhabditis elegans kinesin light c...    27   5.1  
U55369-14|AAN84862.1|  540|Caenorhabditis elegans Kinesin light ...    27   5.1  
U55369-13|AAN84863.1|  501|Caenorhabditis elegans Kinesin light ...    27   5.1  
U55369-12|AAK52182.1|  522|Caenorhabditis elegans Kinesin light ...    27   5.1  
U55369-11|AAT68902.1|  531|Caenorhabditis elegans Kinesin light ...    27   5.1  
AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    27   6.8  
Z29645-1|CAA82753.1|  522|Caenorhabditis elegans kinesin light c...    26   9.0  

>Z29644-1|CAA82752.1|  540|Caenorhabditis elegans kinesin light
           chain (isoform 1) protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 207 AFRIYDEQPGPEDDNYSR*KQCIQHAYL 124
           A  IY+ + GP+D N ++ K  +  AYL
Sbjct: 358 ALEIYESKLGPDDPNVAKTKNNLSSAYL 385


>U55369-14|AAN84862.1|  540|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform b protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 207 AFRIYDEQPGPEDDNYSR*KQCIQHAYL 124
           A  IY+ + GP+D N ++ K  +  AYL
Sbjct: 358 ALEIYESKLGPDDPNVAKTKNNLSSAYL 385


>U55369-13|AAN84863.1|  501|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform c protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 207 AFRIYDEQPGPEDDNYSR*KQCIQHAYL 124
           A  IY+ + GP+D N ++ K  +  AYL
Sbjct: 358 ALEIYESKLGPDDPNVAKTKNNLSSAYL 385


>U55369-12|AAK52182.1|  522|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform a protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 207 AFRIYDEQPGPEDDNYSR*KQCIQHAYL 124
           A  IY+ + GP+D N ++ K  +  AYL
Sbjct: 379 ALEIYESKLGPDDPNVAKTKNNLSSAYL 406


>U55369-11|AAT68902.1|  531|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform d protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 207 AFRIYDEQPGPEDDNYSR*KQCIQHAYL 124
           A  IY+ + GP+D N ++ K  +  AYL
Sbjct: 358 ALEIYESKLGPDDPNVAKTKNNLSSAYL 385


>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 378 LYSGTFN*TT*HYICTQLSYNNYTL 304
           ++   F  T  HYICT LS+  Y+L
Sbjct: 7   IFEEPFGYTVVHYICTPLSFPMYSL 31


>Z29645-1|CAA82753.1|  522|Caenorhabditis elegans kinesin light
           chain (isoform 2) protein.
          Length = 522

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 207 AFRIYDEQPGPEDDNYSR*KQCIQHAYL 124
           A  IY+ + GP+D N +  K  +  AYL
Sbjct: 379 ALEIYESKLGPDDPNVANTKNNLSSAYL 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,581,957
Number of Sequences: 27780
Number of extensions: 170404
Number of successful extensions: 373
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)