Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30683
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   1.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.6  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   10.0 

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 301 VVMHKLTA-TSSLQNQHTLN---YXMSVTFXXLQQEXKFDXINFCSXNKKN 161
           +++  ++A TS+  NQ  ++   Y + + F     + KFD I FC  +K++
Sbjct: 665 LILSSMSADTSNFSNQELVDFDKYLVELLFLSFAFKDKFDWIRFCQVSKRD 715


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 214 VSXGMLPTLXNLMCADFVN*MSLLTCALPLDLCSDV 321
           +S  +L T+ N+  A FV  +S +TCA  + LCS +
Sbjct: 544 LSPVILLTICNI--APFVENLSFVTCAKLMQLCSSL 577


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 555 PCYYHPACYCRLCCCYRVGR 614
           P    P C CRLC   R GR
Sbjct: 88  PVAVEPGCVCRLCDYCRSGR 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,056
Number of Sequences: 5004
Number of extensions: 43433
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)