Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30681
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 91 2e-19
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 66 4e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 63 4e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 61 2e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 60 4e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 56 4e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 55 9e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 54 2e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 52 8e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 52 1e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 52 1e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 51 2e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 51 2e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 8e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 48 1e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 7e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 45 9e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 43 4e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 43 4e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 43 5e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 5e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 35 0.010
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 35 0.010
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.071
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.38
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 2.0
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 4.7
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 6.1
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 26 6.1
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 25 8.1
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 8.1
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 90.6 bits (215), Expect = 2e-19
Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 EKRRKLTEILQRG-VEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALA 178
+K R++ EIL+ PPIIIFVN K+ + +AK L +G++A TLHG K QEQR+ A+
Sbjct: 501 KKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIE 560
Query: 179 SLKGGAKDILVATDVAGRGIDIKDV 253
L+ DILVATD+AGRGIDI +V
Sbjct: 561 QLRNKTADILVATDIAGRGIDIPNV 585
Score = 85.8 bits (203), Expect = 5e-18
Identities = 38/67 (56%), Positives = 53/67 (79%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPE 435
+V+NY+MAK+IEDYTHRIGRTGRAGK+G A++F+ ED+ ++YDL+ +L S+ + P E
Sbjct: 587 LVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDE 646
Query: 436 LMNHPEA 456
L NH A
Sbjct: 647 LRNHEAA 653
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.5 bits (155), Expect = 4e-12
Identities = 28/79 (35%), Positives = 48/79 (60%)
Frame = +2
Query: 17 LTEILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGA 196
L E+ ++ ++FV++++ AD L L K G+ + ++HGGK Q RD ++ K G
Sbjct: 659 LGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGV 718
Query: 197 KDILVATDVAGRGIDIKDV 253
D+L+AT V RG+D+K +
Sbjct: 719 FDVLIATSVVARGLDVKSL 737
Score = 59.7 bits (138), Expect = 4e-10
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPE 435
+V+NYD +EDY HR+GRTGRAG TG A++F+T E D+ + L S P E
Sbjct: 739 LVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSK-QPVPKE 797
Query: 436 L 438
L
Sbjct: 798 L 798
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.9 bits (146), Expect = 4e-11
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +2
Query: 53 IIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGR 232
++IF K+ AD + + L + G+ A +HG K Q++RD+ L + G I+VATDVA R
Sbjct: 372 VLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASR 431
Query: 233 GIDIKDV 253
GID+K +
Sbjct: 432 GIDVKGI 438
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVL 402
V NYD EDY HRIGRTGRAG G A ++ T +++ +L +L
Sbjct: 441 VFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSIL 488
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.9 bits (141), Expect = 2e-10
Identities = 34/81 (41%), Positives = 48/81 (59%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPE 435
MVIN+D +++ Y HRIGRTGRAG TG+A++F TKED + V+ +S C E
Sbjct: 359 MVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSG---C--E 413
Query: 436 LMNHPEAQHKPGTVVTKKRRE 498
+ N A KP + KK ++
Sbjct: 414 VPNWVMALPKPSKEMKKKLKK 434
Score = 42.3 bits (95), Expect = 7e-05
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 17 LTEILQRG-VEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGG 193
L +++ G ++P ++IFV + A L L + +HG Q +R+ ALA + G
Sbjct: 278 LRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKG 337
Query: 194 AKDILVATDVAGRGIDIKDV 253
+L+ATD+ RGID V
Sbjct: 338 EIWVLIATDLLARGIDFHGV 357
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 59.7 bits (138), Expect = 4e-10
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPEL 438
VINYD+ I+DY HRIGRTGRAG TG+A++F + + + +L + LL + CP L
Sbjct: 502 VINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIE-LLQEANQECPSFL 560
Query: 439 M 441
+
Sbjct: 561 I 561
Score = 57.6 bits (133), Expect = 2e-09
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 EKRRKLTEILQR-GVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALA 178
EKR L +IL E +IFV K+ AD L L F A ++HG + Q +R+ AL
Sbjct: 415 EKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALE 474
Query: 179 SLKGGAKDILVATDVAGRGIDIKDV 253
+ G I+VAT VA RG+DI +V
Sbjct: 475 LFRSGRTSIMVATAVASRGLDIPNV 499
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQ 396
+VINYD+ E+Y HRIGR+GR G+ G A++FVT ED + D++Q
Sbjct: 331 LVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQ 377
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 56 IIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRG 235
+IF N ++ D L + + + F ++HG Q++RD + + G +L+ TD+ RG
Sbjct: 264 VIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARG 323
Query: 236 IDIKDV 253
ID++ V
Sbjct: 324 IDVQQV 329
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 55.2 bits (127), Expect = 9e-09
Identities = 32/64 (50%), Positives = 35/64 (54%)
Frame = +2
Query: 53 IIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGR 232
IIIF LA L LGF+A LHG Q R AL K GA+ LVATDVA R
Sbjct: 288 IIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAAR 347
Query: 233 GIDI 244
G+DI
Sbjct: 348 GLDI 351
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVL 402
+VINYD+ + Y HR+GRT RAG+ GK+++ VT+ D F ++ +
Sbjct: 356 VVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATI 404
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.4 bits (125), Expect = 2e-08
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +2
Query: 5 KRRKLTEILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASL 184
K RK+ ++L ++IFV A+ L + L + F + +HGG QE+R +
Sbjct: 282 KNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAF 341
Query: 185 KGGAKDILVATDVAGRGIDIKDV 253
K K I VATDV GRGIDI+ V
Sbjct: 342 KDFDKRICVATDVFGRGIDIERV 364
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +1
Query: 247 RCHMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTC 426
R ++VINYDM + + Y HR+GR GR G G A++F + E+ + D Q +++
Sbjct: 363 RVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITEL 422
Query: 427 PPEL 438
P E+
Sbjct: 423 PDEI 426
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 52.0 bits (119), Expect = 8e-08
Identities = 20/46 (43%), Positives = 35/46 (76%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLK 393
+VIN+D+ + +DY HR+GRT RAG++G+++S VT+ D L + ++
Sbjct: 329 LVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIE 374
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/66 (40%), Positives = 36/66 (54%)
Frame = +2
Query: 56 IIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRG 235
IIFVN+ + A+++ L L LH Q +R +L + A ILVATDVA RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 236 IDIKDV 253
+DI V
Sbjct: 322 LDIPSV 327
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = +2
Query: 56 IIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRG 235
+IF N ++ D L + L + F ++HG Q QRD + + G+ IL+ TD+ RG
Sbjct: 262 VIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARG 321
Query: 236 IDIKDV 253
ID++ V
Sbjct: 322 IDVQQV 327
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQ 396
+VINYD+ E+Y HRIGR GR G+ G +++FVT +D + +++Q
Sbjct: 329 LVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQ 375
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 51.6 bits (118), Expect = 1e-07
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +1
Query: 247 RCHMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVL 402
+ +VIN TIEDY HRIGRTGRA G A++F T +D + +L VL
Sbjct: 484 KVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVL 535
Score = 48.4 bits (110), Expect = 1e-06
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +2
Query: 5 KRRKLTEILQR-----GVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDF 169
K R L +L++ G + I+IFV KK A +G +N +HG Q R
Sbjct: 399 KERMLDNLLRKHLSSGGKDDKILIFVLYKKEA-ARVEGTLARKYNVVGIHGDMSQGARLQ 457
Query: 170 ALASLKGGAKDILVATDVAGRGIDIKDV 253
AL K G +LVATDVA RG+DI V
Sbjct: 458 ALNDFKSGKCPVLVATDVAARGLDIPKV 485
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 50.8 bits (116), Expect = 2e-07
Identities = 29/66 (43%), Positives = 35/66 (53%)
Frame = +2
Query: 56 IIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRG 235
IIF K A + L NA +HG QEQR AL + G + L+ATDVA RG
Sbjct: 508 IIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRG 567
Query: 236 IDIKDV 253
IDIK +
Sbjct: 568 IDIKGI 573
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKED 369
+VINY+ T E Y HR+GRT RAG++G+A++ + D
Sbjct: 575 VVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGD 612
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +1
Query: 253 HMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTCPP 432
++VIN+D K E Y HRIGR+GR G G A+SF++ D Y ++ L + + PP
Sbjct: 351 NVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENE-LGTEIQPIPP 409
Query: 433 EL 438
+
Sbjct: 410 SI 411
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +2
Query: 56 IIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRG 235
IIF N ++LAK + +LG++ H Q R+ + + G LV +D+ RG
Sbjct: 285 IIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRG 344
Query: 236 IDIKDV 253
IDI+ V
Sbjct: 345 IDIQAV 350
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.8 bits (111), Expect = 8e-07
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFV 357
V+N+DM + Y HRIGRT RAGK G AMSFV
Sbjct: 398 VLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
Score = 29.5 bits (63), Expect = 0.50
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 35 RGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVA 214
R ++ I+IFVN+ L LE+ G + L+ R L G I++A
Sbjct: 257 RLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIA 316
Query: 215 TDVAGRGIDIKDV 253
TD +G +I+++
Sbjct: 317 TDESGMMGEIEEL 329
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/48 (47%), Positives = 29/48 (60%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVL 402
VINYD + + HR+GRT RAG+TG A S V ED+ DL+ L
Sbjct: 418 VINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFL 465
Score = 45.6 bits (103), Expect = 7e-06
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +2
Query: 2 EKRRKLTEILQRGVEP----PIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDF 169
+KR++ E+ +G E ++FV K + +++ L + G++ ++G QE R
Sbjct: 328 KKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLN 387
Query: 170 ALASLKGGAKDILVATDVAGRGIDI 244
+ + + G ++LV TDVA RGIDI
Sbjct: 388 EINNFRLGKTNLLVVTDVASRGIDI 412
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +2
Query: 17 LTEILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGA 196
L L+R ++ +I+F++ +A+ L + LHG + Q++R
Sbjct: 327 LFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAE 386
Query: 197 KDILVATDVAGRGIDIKDVIW 259
K IL+ T+VA RG+DI V W
Sbjct: 387 KGILLCTNVAARGLDIPAVDW 407
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGK-TGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPE 435
++ YD DY HR+GRT R K TGK++ F+ + LK ++ + P
Sbjct: 408 IVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEFEFPAN 467
Query: 436 LMNHPEAQ 459
+ + ++Q
Sbjct: 468 KVANVQSQ 475
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 45.2 bits (102), Expect = 9e-06
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLAS 411
+V+ YD + +DY HRIGRT RAG G A+ F+ ++S LK + A+
Sbjct: 517 LVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSAN 568
Score = 31.9 bits (69), Expect = 0.094
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 122 NACTLHGGKGQEQRDFAL---ASLKGGAKDILVATDVAGRGIDIKDV 253
N LHG Q+ R L +S + IL+ TDVA RG+D+ +V
Sbjct: 469 NVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNV 515
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 289 EDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLL 405
+DY HRIGRTGRAGKTG+A + +++ +K + L
Sbjct: 375 DDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPL 413
Score = 30.7 bits (66), Expect = 0.22
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +2
Query: 53 IIIFVNQKKGADVLAKGLEK-LGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAG 229
II+F+ D + LE L LH G QR S + IL ATDV
Sbjct: 295 IIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVA 354
Query: 230 RGIDIKDV 253
RG+D ++
Sbjct: 355 RGMDFPNI 362
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVL 402
VINYD ++ Y HRIGRT RAG+ G A + V + F L + L
Sbjct: 509 VINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQL 556
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +2
Query: 56 IIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRG 235
IIF +K A+ +A+ + G L G QRD + S + G +LV T+V RG
Sbjct: 356 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 415
Query: 236 IDIKDV 253
ID+ V
Sbjct: 416 IDVSQV 421
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Frame = +1
Query: 253 HMVINYDMA------KTIEDYTHRIGRTGRAGKTGKAMSFVTKEDS 372
++V+NYDM + Y HRIGRTGR G+ G +++FV + S
Sbjct: 422 NLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS 467
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.5 bits (88), Expect = 5e-04
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +2
Query: 56 IIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRG 235
++F N + + L +L + LH Q++R +L K K +LV TDVA RG
Sbjct: 393 MVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARG 452
Query: 236 IDIKDV 253
IDI V
Sbjct: 453 IDIPSV 458
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTG 339
VI+Y + T + Y HR GRT RA + G
Sbjct: 461 VIHYHVPHTADMYVHRSGRTARANEDG 487
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 110 KLGFNACTLHGGKGQEQRDFALASLK-GGAKDILVATDVAGRGIDIKDV 253
KL F LHG + Q R K K +L TD+A RG+DI +V
Sbjct: 280 KLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNV 328
Score = 29.1 bits (62), Expect = 0.66
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTGKAM 348
V+ D + ++HR GR GRAG+ G A+
Sbjct: 331 VLQLDPPLDPKSFSHRCGRAGRAGRAGVAI 360
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLA 408
VI D + ++ Y HR+GRT R ++G A+ + + A L+ +A
Sbjct: 357 VIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLESKKIA 406
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 56 IIFVNQKKGADVLAKGLEKL--GFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAG 229
I+F++ K + + ++ G + LHG + Q R A +L TD+
Sbjct: 287 IVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVA 346
Query: 230 RGIDIKDVIW 259
RG+D V W
Sbjct: 347 RGLDFPAVDW 356
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.071
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = -3
Query: 339 TSFSCTTGTADTMSVVFNSLRHIV---INDHMTSLMSIPRPATSVATRISLAPPLRLASA 169
TS SCTT T+ + +SL + + TS SIP P TS ++ + + PL S
Sbjct: 111 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTST 170
Query: 168 KSRCSWPLPPCSVQALKPSFSSPFARTSAP 79
S +PP + S S+P T P
Sbjct: 171 SCTTSTSIPPTGGSS---SLSTPITPTVPP 197
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -3
Query: 339 TSFSCTTGTADTMSVVFNSLRHIV--INDHMTSLMSIPRPATSVATRISLAPPLRLASAK 166
TS SCTT T+ + I + TS SIP P TS ++ + + PL S
Sbjct: 225 TSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 284
Query: 165 SRCSWPLPP 139
S +PP
Sbjct: 285 CTTSTSIPP 293
Score = 27.5 bits (58), Expect = 2.0
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = -3
Query: 339 TSFSCTTGTADTMSVVFNSLRHIV--INDHMTSLMSIPRPATSVATRISLAPPLRLASAK 166
TS SCTT T+ + NS + + TS S P P S ++ + + PL S
Sbjct: 335 TSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTS 392
Query: 165 SRCSWPLPPCSVQALKPSFSSPFARTSAP 79
S +PP + + P +S P
Sbjct: 393 CTTSTSIPPTGNSTTPVTPTVPPTSSSTP 421
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -3
Query: 339 TSFSCTTGTADTMSVVFNSLRHIV--INDHMTSLMSIPRPATSVATRISLAPPLRLASAK 166
TS SCTT T+ + NS + + TS S P P S ++ + + PL S
Sbjct: 281 TSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTS 338
Query: 165 SRCSWPLPP 139
S +PP
Sbjct: 339 CTTSTSIPP 347
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.9 bits (64), Expect = 0.38
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 44 EPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDV 223
E II +++ V AK G A H G + +R + G+ I+VAT
Sbjct: 743 ESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIA 802
Query: 224 AGRGIDIKDV 253
G G+D DV
Sbjct: 803 FGMGVDKGDV 812
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 256 MVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQV 399
M+I YD + + R+GRTGR K+GK +T++ ++ QV
Sbjct: 552 MIICYDASSSPIRTIQRMGRTGRK-KSGKVFVLLTEDCEDSKWERSQV 598
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 143 GKGQEQRDFALASLKGGAKDILVATDVAGRGIDIKD 250
G Q Q+ + + G + LVAT + G+DI D
Sbjct: 514 GMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGD 549
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 295 YTHRIGRTGRAGKTGKAMSFV 357
Y H GR G G+TGK +F+
Sbjct: 505 YQHIAGRLGAMGQTGKIFNFI 525
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 82 TFFLVNKNNNGWFDTTLQNL 23
TF NK+NNGW ++ NL
Sbjct: 161 TFSFYNKSNNGWQNSIRHNL 180
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 152 QEQRDFALASLKGGAKDILVATDVAGRGIDI 244
+ Q+D L K G ++L+AT VA GID+
Sbjct: 410 RRQKD-TLHKFKTGKYNVLIATAVAEEGIDV 439
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +1
Query: 262 INYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPELM 441
I+Y ++ +I + +TG + K+ + Y +K L++ C PE
Sbjct: 61 IDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPS 120
Query: 442 NHPEAQ 459
N +AQ
Sbjct: 121 NPQDAQ 126
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +2
Query: 257 WSLITIWRRLLKTTLIVSA 313
W+L+ IWR + K T+ +++
Sbjct: 619 WNLVNIWRHIFKETVTLNS 637
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 113 LGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRGIDIKDV 253
+G +A G Q+ ++ + + G + L+AT + G+DI +V
Sbjct: 465 IGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEV 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,889
Number of Sequences: 5004
Number of extensions: 56834
Number of successful extensions: 217
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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