Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30681
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       65   5e-13
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.71 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.71 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 65.3 bits (152), Expect = 5e-13
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
 Frame = +2

Query: 2   EKRRKLTEILQR----GVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDF 169
           +K+  L EIL+R    G     ++FV  KK AD +A  L +  +   ++HG + Q QR+ 
Sbjct: 433 KKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREE 492

Query: 170 ALASLKGGAKDILVATDVAGRGIDIKDV 253
           ALA  K G   ILVAT VA RG+DIK+V
Sbjct: 493 ALADFKSGRMSILVATAVAARGLDIKNV 520



 Score = 58.4 bits (135), Expect = 6e-11
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = +1

Query: 259 VINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFV-TKEDSALFYDLKQVLLASSVSTCPPE 435
           VINYD+ K I++Y HRIGRTGR G  G+A SF   +ED+ L  DL ++L  ++ S     
Sbjct: 523 VINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSVPDWM 582

Query: 436 LMNHPEAQHKPGTVVTKKRREEM 504
           +  +      PG  ++K   E++
Sbjct: 583 MGGNANRNFMPGRGISKFGGEDV 605


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = -2

Query: 226 CHVCRHENIFSAPFETGKCKVTLFLAFTTMQRTGIETKFFKSLCKNIC 83
           C  C H  +FS  F  G C   +      +        F   +CK  C
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFC 82


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = -2

Query: 226 CHVCRHENIFSAPFETGKCKVTLFLAFTTMQRTGIETKFFKSLCKNIC 83
           C  C H  +FS  F  G C   +      +        F   +CK  C
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFC 530


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 505  SSLHVFSLLRLSLAYVEPQG 446
            S+LHV++ L++SL    P+G
Sbjct: 997  SNLHVYAPLKISLDVNTPKG 1016


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = -3

Query: 330 SCTTGTADTMSVVFNSLRHIVINDHMTSLMSIPRPATSVATRIS 199
           +C +G++ T S +   L H + N H+   + + R +   +  +S
Sbjct: 135 ACHSGSSLTKSRLMRCLHHDIENAHIRRTLHMNRTSLKTSKIVS 178


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 252 TSLMSIPRPATSVATRISLAPPLRLASAKSRCSWPLPPCSVQALKP 115
           T+LMS P P   V+    ++    +++ +S     LPP +   + P
Sbjct: 374 TALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPP 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,474
Number of Sequences: 438
Number of extensions: 4665
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)