Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30680
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.76 
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   7.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   7.1  
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   9.4  

>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 571 AMAGFVWIYFGSDHNYKEYFIY-LVALLIGFGGAVMLVTSLALTADL 708
           +M+GF  +  G+  N + + +  L+AL+   GG +++VT  A  ADL
Sbjct: 137 SMSGFFTLGLGTIVNVERFTLSKLLALMASVGGVIIVVTQDAKQADL 183


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 532 FSRKINYFFGSTCAMAGFVWIYFGSDHNYKEYFIYLVALLIGFGGAVMLVTS 687
           + R++  F   +  + G +W+ + S      YF+   A L G GG +  V +
Sbjct: 214 YGRRLVLFITVSFLLLGDLWLLYQSYAPKHPYFVLFAAALKGLGGYISTVVA 265


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 463 CYTTRTVHW*FNSSRIQRLAPRSFSRKINYFFGSTCAMAGFVWIYFG 603
           C++ R+  W F +  I+  +P+  S+ +     + C   G+VW Y+G
Sbjct: 673 CHSKRSSEW-FVAPPIEESSPKDKSKIV-----ALCQRCGYVWRYYG 713


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 534 FKKNKLLFWF---HMCNGWFCMDIFWIRSQL*GVFHLFGRITYRFWWCS 671
           F KN  LF     H+ NG F + + ++  ++  +   FG   YRF  CS
Sbjct: 434 FFKNLKLFVLDEAHVYNGIFGVHVAFVLRRMRRIAEYFGNSQYRFVSCS 482


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -2

Query: 244 SEAIVPTPITIKTMCLNFQLSDGPTCFLSHSPVICNIIHVAMYTNKLENTVNAYL 80
           S +++P+  T+ +   +  +S  P    S SP+  +   V+ Y+  L N  ++ L
Sbjct: 667 SSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSL 721


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 189 WKFRHIVFIVMGVGTIASLLFH 254
           W   HIV+IV+G  T  SLL +
Sbjct: 139 WLVSHIVWIVVGTTTFFSLLLY 160


>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 485 IGSLTAAGFRGWLRDHFQEK*TT---FLVPHVQWLVLYGYILDQIT 613
           +G LT  G  GWL   +     T   +L+P++ WL   GY++  +T
Sbjct: 118 LGILT--GLVGWLAKTWWPLAPTASKWLIPYLAWLGYAGYLVSNVT 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,722
Number of Sequences: 5004
Number of extensions: 66756
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)