Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30680
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    38   0.007
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    35   0.064
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     30   2.4  

>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 332 FIRKPLLYQVAGVYMSTRLVVNLSQVLIPLY 424
           + +K L YQVA VYM TRLV N+SQ L+  Y
Sbjct: 207 WFKKVLYYQVALVYMFTRLVTNVSQALLAFY 237



 Score = 35.5 bits (78), Expect = 0.049
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +2

Query: 716 KETEASAFVYGLMSFYDKLSCGLAI 790
           ++    AFVYG +SF DK+SCGLA+
Sbjct: 334 EDLNGCAFVYGSLSFVDKVSCGLAL 358



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 628 FIYLVALLIGFGGAVMLVTSLALTADLIGERNRGFCF 738
           F+Y +++ IG   A+M VTS+++   L+GE   G  F
Sbjct: 305 FMYALSITIGVANALMTVTSISMEGILVGEDLNGCAF 341


>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 35.1 bits (77), Expect = 0.064
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +2

Query: 332 FIRKPLLYQVAGVYMSTRLVVNLSQVLIPLY 424
           + +K L YQVA +YM  RL+ N+SQ LI  Y
Sbjct: 242 WFKKALYYQVALLYMLARLITNVSQSLIAFY 272



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +2

Query: 734 AFVYGLMSFYDKLSCGLAI 790
           AFVYG +SF DK+SCG+A+
Sbjct: 375 AFVYGSLSFLDKMSCGIAL 393



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 3   AVQISHLSLIPELAQDDHTRTHLTAIRYAFTVFSNLLVYIATWII 137
           A Q+SH+S++  +  +  +R  L + R AFT+ +NL +Y    ++
Sbjct: 138 ATQVSHMSMVNCMTLNSTSRVALASCRNAFTMVANLGLYAIALVV 182


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -1

Query: 191  PTVR-W-PYLLFVTFSCNMQYYPRSNVHQQ-IREHSEC-ISDSGQVC 63
            PT++ W  YLL + +S   +Y P++++H + ++E S   + D  +VC
Sbjct: 5104 PTIQNWRKYLLILCYSTKPKYQPKASIHHKGLKEDSSIEVDDYSEVC 5150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,892,747
Number of Sequences: 37544
Number of extensions: 393635
Number of successful extensions: 876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)