Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30680
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical pr...    63   3e-10
Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z68318-7|CAA92696.2|  385|Caenorhabditis elegans Hypothetical pr...    32   0.54 
CU457740-9|CAM36339.1|  357|Caenorhabditis elegans Hypothetical ...    31   1.2  
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    30   1.7  
Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U29612-1|AAA68801.1|  387|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical
           protein F16H11.1 protein.
          Length = 501

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   AVQISHLSLIPELAQDDHTRTHLTAIRYAFTVFSNLLVYIA-TWIILHITGECDKKQVGP 179
           +VQISHL+LIPEL+    +R  + ++RYAFTV +NL VY A  W++   TG      +GP
Sbjct: 161 SVQISHLALIPELSSVPASRATMNSLRYAFTVIANLSVYFALAWLLSESTGH---TSIGP 217

Query: 180 SDSWKFRHIVFIVMGVGTIASLLFH 254
            D   FR   ++V+ +G   + +F+
Sbjct: 218 WDFSHFRLAGWLVVVLGITVAFVFY 242



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +2

Query: 716 KETEASAFVYGLMSFYDKLSCGLA 787
           K TE+ AFVYG MSF+DKLS G+A
Sbjct: 400 KNTESGAFVYGAMSFFDKLSNGIA 423



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 493 FNSSRIQRLAPRS-FSRKINYFFGSTCAMAGFVWIYFGSDHNYKEYFIYLVALLIGFGGA 669
           F+ S +  L   S  S+KI Y FG    M     +      +   + IY +A+ IG   A
Sbjct: 329 FSVSMVNSLPVVSKLSKKILYSFGLASGMLSCAVMML----DLPGWKIYALAVGIGIAQA 384

Query: 670 VMLVTSLALTADLIGERNRGFCF 738
           ++L+TSL++TADLI +      F
Sbjct: 385 ILLITSLSITADLINKNTESGAF 407



 Score = 33.1 bits (72), Expect = 0.23
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 353 YQVAGVYMSTRLVVNLSQVLIPLY 424
           YQ+A +YM +RL +N+SQV  P Y
Sbjct: 282 YQIALLYMLSRLYINISQVYFPFY 305


>Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical
           protein C56A3.3 protein.
          Length = 426

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 163 LSHSPVICNIIHVAMYTNK-LENTVNAYLIAVKC 65
           LS   V+ NII+V +YT K L+N+ N YL+ + C
Sbjct: 43  LSVFGVLTNIINVFLYTRKRLQNSANTYLLFLAC 76


>Z68318-7|CAA92696.2|  385|Caenorhabditis elegans Hypothetical
           protein T21B10.6 protein.
          Length = 385

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 18  HLSLIPELAQDDHTRTHLTAIRYAFTVFSNLLVYIATWIILH---ITGECDK 164
           H S++P+L  + H RTH+      F V    +VY A  + LH    TGEC K
Sbjct: 219 HESIMPQL--EYHNRTHVGTSVKVFGVSHTSIVYFACQVRLHPQLPTGECPK 268


>CU457740-9|CAM36339.1|  357|Caenorhabditis elegans Hypothetical
           protein C50E10.9 protein.
          Length = 357

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +1

Query: 562 STCAMAGFVWIYFGSDHNYKEYFIYLVALLIGFGGAVMLV 681
           S C +  F+ +Y+G++ NY E F Y++  ++ +   ++++
Sbjct: 262 SLCEVC-FICVYYGAESNYWEVFGYILDFVVSYSNCIIVL 300


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +1

Query: 382 KASS*LIAGAHTLISSPYFRPSCARSSCYTTRTVH-W*FNSSRIQRLAPRSFSRKINYFF 558
           K +S L+     L+ S  F+       C+    +  W   ++RI  +A    S +I   F
Sbjct: 242 KVASQLVRDPTILVCSDIFKDIDVHDQCFLIDYLREWAVKTNRIVIMAISPTSLQILNMF 301

Query: 559 GSTCAMAGFVWIYFGSDHNYKEYF 630
                +A    IYFG   + ++YF
Sbjct: 302 SKAMILASGRMIYFGPPKSMQQYF 325


>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 478 TVHW*FNSSRIQRLAPRSFSRKINYFFGSTCAMAGFVWIYFGSDHNYKE 624
           T HW F++S   RLA R  S   +        + G   +Y+G ++  K+
Sbjct: 387 TPHWQFSNSEASRLASRFESATAHLLSFLQLTLPGANSVYYGQEYGLKD 435


>U29612-1|AAA68801.1|  387|Caenorhabditis elegans Hypothetical
           protein C09B8.3 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 122 NVHQQIREHSECISDSGQVCS 60
           N HQ + EHSEC +D+  + S
Sbjct: 308 NSHQPMSEHSECTADASSIAS 328


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 397 LIAGAHTLISSPYFRPSCARSSCYTTRTVHW*F 495
           +  G  TL+S  +  PS A ++ Y  R  HW F
Sbjct: 554 MYGGDGTLVSEDHGHPSSANNNVYLNRPRHWWF 586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,019,623
Number of Sequences: 27780
Number of extensions: 382183
Number of successful extensions: 944
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)