Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30680
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    29   0.065
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.35 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.7  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 0.065
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 18  HLSLIPELAQDDHTRTHLTAIRYAFTVFSNLLVYIATWIILH-ITGECDKKQVGPSDSWK 194
           H   +  + +DD+ +  + A      V   +++ I T +IL   + EC+KKQ    D+ +
Sbjct: 516 HAMGLDYVGEDDNMQVRIIAGAIVAVVVLLVIIIIMTVLILRRASDECNKKQPSDCDTLE 575

Query: 195 FRH 203
           +R+
Sbjct: 576 YRN 578


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 129 WIILHITGECDKKQVGPSD-SWKFRHIVFIVMGVGTIASLLFH*VSKKHKMHGVAR 293
           WI+     +C++ +  P+    K    VFIV+GVG I  +    +   +K H + +
Sbjct: 799 WILRSNVQQCEQLEKAPNTLGLKNMAGVFIVVGVGIIGGIGLIIIEVAYKKHQIRK 854


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 176 PYLLFVTFSCNMQYYPRSNVHQQIREHSECISDSGQV 66
           PYL F   S  + YY  ++++++I++    +S  GQ+
Sbjct: 271 PYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQL 307


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 603 SKIYPYKTSHCTCGTK 556
           S +Y Y+ ++CT  TK
Sbjct: 40  SNVYQYRCANCTYATK 55


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 233 SANTHNYKNY 204
           S+N +NYKNY
Sbjct: 305 SSNNYNYKNY 314


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 233 SANTHNYKNY 204
           S+N +NYKNY
Sbjct: 316 SSNNYNYKNY 325


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 233 YSLTIVSLSVKETQNARSRQVLIDAEESGAHN 328
           Y++ + + S+ E +   +   L+DA + G HN
Sbjct: 104 YNVAVPTKSILEKKPDVTTVELVDATDPGEHN 135


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 364 GYLI*KWFTNEKVVSTAF 311
           GY+I  WFT    +S  F
Sbjct: 545 GYMIYIWFTTSGTISEKF 562


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 364 GYLI*KWFTNEKVVSTAF 311
           GY+I  WFT    +S  F
Sbjct: 598 GYMIYIWFTTSGTISEKF 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,149
Number of Sequences: 438
Number of extensions: 4896
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)