Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30679
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    38   6e-04
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   1.6  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   2.1  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    25   4.8  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   6.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   6.3  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   6.3  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +2

Query: 2   LYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 112
           +YSSS D L+++  G+   IQATD SE + E V EK+
Sbjct: 98  VYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 14  SFDALKKSLVGVQKYIQATDLSEASQ 91
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +1

Query: 76  LGSVSGGRRREAPRHRSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 246
           LG   G ++ E+ R + P  S    +       EP +RHS     RP+ H   S +T+++
Sbjct: 20  LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79

Query: 247 E*YNMIDFTGGRTSCE 294
              + I F G   S E
Sbjct: 80  ---SEILFDGNAESAE 92


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 187 RSVGERVRFRRELVCKCCLLAIGGAELLFDGLLRRFREVGGL 62
           RSVG R   R++L            E+L DGL++RF +  G+
Sbjct: 294 RSVGNRETLRKKLA--------DPPEILIDGLIKRFTQTTGI 327


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 332 CREA-VMRFGLKGGAAVVTIWVAHLCC 409
           CR A  +R G+K G  ++ I V  +CC
Sbjct: 7   CRSANTLRKGIKNGKLILKIIVNDVCC 33


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 109 APRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PL 225
           APR R P  ++ T A  E  P  +   P  TR     PL
Sbjct: 24  APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 SPINSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKEN 246
           SP+++      D ++PAL  S      P+H   LS   KEN
Sbjct: 391 SPLSTPLKAQFDPSKPALNRSIDHQKTPQHKRYLSTEFKEN 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,203
Number of Sequences: 5004
Number of extensions: 39231
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)