Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30679
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   1.9  
U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    27   5.7  

>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 196 RQGRSVGERVRFRRELVCKCC 134
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


>U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical
           protein B0310.3 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 261 HIILFVFLCNNTKRLVVSW--PRVVRAGVSESGFGFVASSCV 142
           ++++F+++C N   + VS+  P +  A  SE  +  + S CV
Sbjct: 404 YVLVFIYVCTNVLTVGVSYEFPYITLANKSEKNWDSLFSKCV 445


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 76  LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 174
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 76  LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 174
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,382,376
Number of Sequences: 27780
Number of extensions: 240728
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)