Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30676
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 77 1e-15
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 76 2e-15
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 29 0.14
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 25 2.3
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 4.1
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 24 5.4
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 24 7.1
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 24 7.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 9.4
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 23 9.4
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 76.6 bits (180), Expect = 1e-15
Identities = 43/87 (49%), Positives = 53/87 (60%)
Frame = +2
Query: 2 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAC 181
+HY + +G KG K T +S+ RK+ AR +KV+ ALE QF GRL A
Sbjct: 115 THYGILMG-SKGKKATSTPNP-----KSKHVQRKHSARLGDSKVDSALETQFAAGRLYAV 168
Query: 182 VASRPGQCGRADGYILEGKELEFYQER 262
V+SRPGQ GR DGYILEG+EL FY R
Sbjct: 169 VSSRPGQSGRCDGYILEGEELHFYLRR 195
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 75.8 bits (178), Expect = 2e-15
Identities = 43/87 (49%), Positives = 53/87 (60%)
Frame = +2
Query: 2 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAC 181
+HY + +G KG K T +S+ RK+ AR +KV+ ALE QF GRL A
Sbjct: 115 THYGILMG-SKGKKATATPTP-----KSKHVQRKHSARLGDSKVDSALETQFAAGRLYAV 168
Query: 182 VASRPGQCGRADGYILEGKELEFYQER 262
V+SRPGQ GR DGYILEG+EL FY R
Sbjct: 169 VSSRPGQSGRCDGYILEGEELHFYLRR 195
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 29.5 bits (63), Expect = 0.14
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 254 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 141
D + CLLR H+RD + + RK N G LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 2.3
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 68 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 238
++ K +K A + L RQ+ K A EE+ RLL G+ GR ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 4.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 216 SARPH*PGRLATQASKRPVWNCSSRAPSTLARRC 115
S +PH P + T+ +P + S S LAR+C
Sbjct: 154 SEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKC 187
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 24.2 bits (50), Expect = 5.4
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = -3
Query: 223 VTIGATTLTWATRHASQ 173
+T+G T+L+W+ RH+ +
Sbjct: 329 LTLGGTSLSWSWRHSGR 345
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 8 YTLPLGRKKGAKLTE 52
Y LPLGRK K TE
Sbjct: 492 YILPLGRKTARKCTE 506
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 23.8 bits (49), Expect = 7.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 14 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE-GALEE 151
LPL K EAE+ ++ K T L+R+ AK + G L E
Sbjct: 153 LPLITKHLRLFVEAEQLVVGNKAVSFTDHSELSREVAAKYDHGRLHE 199
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 41 KLTEAEEAIINKKRSQKTARKYLARQR 121
+L E+E+ + S +RKY +RQR
Sbjct: 717 RLIESEDKGYRSRSSSPASRKYRSRQR 743
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 174 SKRPVWNCSSRAPS 133
SK P WN SR P+
Sbjct: 843 SKTPAWNSGSRTPA 856
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,140
Number of Sequences: 5004
Number of extensions: 13080
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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