Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30676
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 95 1e-20
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 88 2e-18
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 2.2
10_07_0170 - 13777590-13777973,13778073-13778339 27 3.8
06_03_0451 - 20925100-20926734 27 5.0
05_05_0226 + 23442971-23443857,23444209-23446324 27 5.0
02_02_0391 - 9646256-9646528 27 5.0
11_01_0551 + 4361640-4363386,4363443-4363687 26 6.6
02_05_0217 - 26842625-26842790,26842985-26843136,26843264-268433... 26 6.6
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 26 8.7
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 95.1 bits (226), Expect = 1e-20
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 8/95 (8%)
Frame = +2
Query: 2 SHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 157
+HY + +GRKK A+ E E A K+S RK RQ+ ++ +EEQF
Sbjct: 116 THYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQF 175
Query: 158 HTGRLLACVASRPGQCGRADGYILEGKELEFYQER 262
+GRLLAC++SRPGQCGRADGYILEGKELEFY ++
Sbjct: 176 GSGRLLACISSRPGQCGRADGYILEGKELEFYMKK 210
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 87.8 bits (208), Expect = 2e-18
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = +2
Query: 50 EAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYIL 229
+AE K+S RK RQ+ ++ +EEQF +GRLLAC++SRPGQCGRADGYIL
Sbjct: 157 DAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYIL 216
Query: 230 EGKELEFYQER 262
EGKELEFY ++
Sbjct: 217 EGKELEFYMKK 227
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 32 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 163
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>10_07_0170 - 13777590-13777973,13778073-13778339
Length = 216
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 83 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 199
+Q ++ A AK+EGA + + GR+ +A PG
Sbjct: 94 AQYILEQFRATTGCAKIEGAAKSMYAAGRVRMAMAPEPG 132
>06_03_0451 - 20925100-20926734
Length = 544
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 151 LF*STLNLSKTLPCQVFSCCLLTSLLVDN 65
++ S N S+ LP + C LL L++DN
Sbjct: 394 IYASNNNFSRNLPANLGDCVLLQELVLDN 422
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 59 EAIINKKRSQK-TARKYLARQRLAKVEGALEEQFHTGRLLACVAS 190
E ++NK SQ A+ RL A FH+G L CVAS
Sbjct: 521 EFLLNKSLSQIFIAKSSRDHPRLGVNTNACHLSFHSGELTECVAS 565
>02_02_0391 - 9646256-9646528
Length = 90
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 221 NHRRDHTDLGDSPRKPANAPCG 156
N RR H D+ D PR+ CG
Sbjct: 29 NTRRQHIDIRDKPRQTQYGACG 50
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 29 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 154
+ G+ T+A E+I KK+ + +K + + A V A EE+
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEE 330
>02_05_0217 -
26842625-26842790,26842985-26843136,26843264-26843307,
26843828-26843930,26844007-26844186
Length = 214
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 266 LIFLDRTRVLCLLRCNHRRDHTDLGD--SPRKPANAPCGIA 150
L+F+ LC++ C R DH + D S +K + P +A
Sbjct: 23 LLFIVFLFTLCIISCEARHDHLRISDKYSSKKSSLVPKDVA 63
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 118 LPCQVFSCCLLTSLLVD 68
LP ++ CCLLT++++D
Sbjct: 361 LPRIIYVCCLLTNIMID 377
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,209,304
Number of Sequences: 37544
Number of extensions: 100674
Number of successful extensions: 371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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