Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30676
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   114   1e-26
Z29115-3|CAA82361.1|  347|Caenorhabditis elegans Hypothetical pr...    30   0.47 
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   3.3  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  114 bits (275), Expect = 1e-26
 Identities = 53/84 (63%), Positives = 66/84 (78%)
 Frame = +2

Query: 2   SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLAC 181
           +HY LPL RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L EQF+TGRLLA 
Sbjct: 115 AHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLAR 174

Query: 182 VASRPGQCGRADGYILEGKELEFY 253
           ++S PGQ G+A+GYILEGKEL+FY
Sbjct: 175 ISSSPGQVGQANGYILEGKELDFY 198


>Z29115-3|CAA82361.1|  347|Caenorhabditis elegans Hypothetical
           protein T26G10.4 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +2

Query: 29  KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCG 208
           KK A L +A E   N+K   +   K + R    +V  AL+ +FHT +L+    SR  Q  
Sbjct: 257 KKLAVLVQATEDS-NEKLFTEDGVKKMQRAMNEQVSRALKHRFHTTKLVKSEISRVVQMH 315

Query: 209 RADG-YILEGKELEFYQERSSLRGRSNM--CN 295
            A   ++  G  L     R   + R N+  CN
Sbjct: 316 PASNKFVARGGNLSLACHRFVHKARLNLLACN 347


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +2

Query: 26  RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 151
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 159 WNCSSRAPSTLARRCLA 109
           W C +RAP+T+  RC A
Sbjct: 555 WTCQTRAPTTIILRCPA 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,026,448
Number of Sequences: 27780
Number of extensions: 77099
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)