Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30676
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   146   5e-38
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   7.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.2  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  146 bits (355), Expect = 5e-38
 Identities = 67/86 (77%), Positives = 74/86 (86%)
 Frame = +2

Query: 5   HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACV 184
           HY LPLGRK+GAKLTEAEE ++NKKRS+K   KY ARQR AKVE ALEEQF TGR+LAC+
Sbjct: 116 HYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACI 175

Query: 185 ASRPGQCGRADGYILEGKELEFYQER 262
           +SRPGQCGR DGYILEGKELEFY  R
Sbjct: 176 SSRPGQCGREDGYILEGKELEFYMRR 201


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 227 LEGKELEFYQERSSLRGRSNMCNL 298
           LE +ELE + E   L      CNL
Sbjct: 253 LEREELEQFAENEDLEELCRGCNL 276


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 296 DYTYYFALLDLIFLDRTRVLCLL 228
           D+ Y   +LD IFL    V C+L
Sbjct: 538 DWKYVAMVLDRIFLWIFTVACVL 560


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 59  EAIINKKRSQKTARKYLARQRLAKVEGALEEQ 154
           E    K + +K  +  LAR    K  GA+E++
Sbjct: 844 EVAYKKHQIRKQKKMELARHAADKWRGAIEKR 875


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,067
Number of Sequences: 438
Number of extensions: 922
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)