Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30675
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.63 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 777 LTMRLQSPHLPSGCRRRWISPRRYHPRMVRM 685
           L ++ QS H P+G  + WI+  RY P  +R+
Sbjct: 787 LQIQKQS-HTPNGIVKTWIAHDRYLPNSLRI 816


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 506 VFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 613
           V    Q +A K A  +   N   II+EPT     YG
Sbjct: 348 VLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 810 WNSLLNSWTKWL 775
           W+S +N WTK L
Sbjct: 391 WSSFINPWTKKL 402


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 810 WNSLLNSWTKWL 775
           W+S +N WTK L
Sbjct: 97  WSSFINPWTKKL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,186
Number of Sequences: 438
Number of extensions: 6243
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)