Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30671
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 182 5e-47
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 29 0.73
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 27 3.9
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 3.9
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 3.9
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 5.2
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 26 6.8
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 6.8
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 9.0
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 182 bits (443), Expect = 5e-47
Identities = 86/170 (50%), Positives = 110/170 (64%)
Frame = +1
Query: 253 SQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLK 432
+QN + GA+TGE S + D G+ + + GHSERRTIF E DE VA+K ALE GL
Sbjct: 63 AQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLT 122
Query: 433 VIACIGETLEERESGQD*GSCF*TIKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQA 612
V+ACIGETL ERE+ + + A+ + W IV+AYEPVWAIGTGKTATP+QA
Sbjct: 123 VVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTGKTATPEQA 181
Query: 613 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLV 762
Q+VH +R W + + SV++ +R+ YGGSV N KE DIDGFLV
Sbjct: 182 QEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLV 231
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 71 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLD-PNVEVIVGVPAIYLSYVKTIIPDNVE 247
M RKF VGGN+KMNG + I+ L L+ +VE ++ +YL + + ++
Sbjct: 1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIG 60
Query: 248 VAARTV 265
V A+ V
Sbjct: 61 VGAQNV 66
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 559 YEPVWAIGTGKT--ATPQQAQDVHHALRNWLSANVSGSVSDAVRI 687
Y +W++G TP+ + VH LR WL V G DA+ +
Sbjct: 172 YLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINM 216
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 332 FTPTSLIIAGEISPVKAPFGDFQQFWLQLRHYQE 231
FTP I + SP PF DF L L Y E
Sbjct: 56 FTPAGGIDTNDSSPTYHPFSDFDYQSLSLALYHE 89
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +2
Query: 437 LPVLVRLSKRENLGKTEEVVFRQLKL*YRPLVTNGKILCLPMNLYGLLVQARLLLPNRLK 616
+P+ +L+K L K E + + L+ + L+ KIL ++ Y ++QA L P++
Sbjct: 473 VPLSRKLNKATILSKATEYI-KSLQSKNKKLIEENKILQKRLSEYTSVIQASLTAPSQPA 531
Query: 617 MSTMLFVTGCRP 652
++L G P
Sbjct: 532 SLSLLGPPGNTP 543
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -3
Query: 702 RATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNS 574
+AT + + Y P +G K + LSL + ++ C NS
Sbjct: 165 KATKFPHFGILYHPESVGSSKSLKIFKNFLSLADTPNIQCVNS 207
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 634 EEHGGHLEPVGE*QSCLYQ*PIQVHRQAQYFP 539
+ +GG+L P E S ++ PI++ R A Y+P
Sbjct: 69 KSYGGNLAPFDEEFSFHFRGPIELKRFAVYYP 100
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 670 SDAVRIQYGGSVTAANAKELASCKDIDGF 756
SD R Q+G S+ +NAKEL I G+
Sbjct: 259 SDLSRGQHGKSIILSNAKELYKSVGIRGY 287
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 378 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSS 280
F + ++ TK N + SN+F+H+ + T +SS
Sbjct: 26 FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSS 58
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 604 QQAQDVHHALRNWLSA 651
+Q Q+ H +RNWLS+
Sbjct: 186 KQTQETHERIRNWLSS 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,186
Number of Sequences: 5004
Number of extensions: 68912
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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