Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30671
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 219 2e-57
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 210 1e-54
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 209 2e-54
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 34 0.11
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 33 0.33
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396... 31 1.3
01_06_0627 - 30705604-30706977 29 3.1
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 7.1
01_06_1102 - 34541341-34541561,34541691-34541769,34541880-345419... 28 7.1
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 7.1
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 28 9.4
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 219 bits (535), Expect = 2e-57
Identities = 103/170 (60%), Positives = 126/170 (74%)
Frame = +1
Query: 253 SQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLK 432
+QNCW GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLK
Sbjct: 56 AQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLK 115
Query: 433 VIACIGETLEERESGQD*GSCF*TIKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQA 612
VIAC+GETLE+RESG KA+ I D W N+V+AYEPVWAIGTGK ATP QA
Sbjct: 116 VIACVGETLEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQA 174
Query: 613 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLV 762
Q+VH LR WL+ANVS V+++ RI YGGSVT AN KELA+ D+DGFLV
Sbjct: 175 QEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLV 224
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +2
Query: 104 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAR 259
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAA+
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQ 57
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 210 bits (512), Expect = 1e-54
Identities = 98/170 (57%), Positives = 123/170 (72%)
Frame = +1
Query: 253 SQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLK 432
+QN W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +K
Sbjct: 112 AQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVK 171
Query: 433 VIACIGETLEERESGQD*GSCF*TIKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQA 612
VIACIGE LEERE+G+ CF +KA +I + W ++V+AYEPVWAIGTGK ATP+QA
Sbjct: 172 VIACIGELLEEREAGKTFDVCFKQMKAFADSITN-WADVVIAYEPVWAIGTGKVATPEQA 230
Query: 613 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLV 762
Q+VH A+R+WL NVS V+ +RI YGGSV AAN ELA +DIDGFLV
Sbjct: 231 QEVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLV 280
Score = 68.1 bits (159), Expect = 7e-12
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +2
Query: 80 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAR 259
KF VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+A+
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQ 113
Query: 260 TV 265
V
Sbjct: 114 NV 115
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 209 bits (511), Expect = 2e-54
Identities = 101/170 (59%), Positives = 122/170 (71%)
Frame = +1
Query: 253 SQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLK 432
+QNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+K
Sbjct: 65 AQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIK 124
Query: 433 VIACIGETLEERESGQD*GSCF*TIKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQA 612
VIACIGETLE+RE+G KA+ I D W N+VLAYEPVWAIGTGK ATP QA
Sbjct: 125 VIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQA 183
Query: 613 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLV 762
Q+VH LR WL NVS +V+++ RI Y GSV AN KELA+ D+DGFLV
Sbjct: 184 QEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLV 233
Score = 51.2 bits (117), Expect = 9e-07
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 77 RKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 250
RKF VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 251 AAR 259
AA+
Sbjct: 64 AAQ 66
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +1
Query: 613 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLV 762
Q VH LR L+ NV ++ R S TA+N KELA D++GFLV
Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLV 122
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 14 LQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNV 178
LQ H + +V S I+E+ RKF + G NW ++ ++ + + LKKG PN+
Sbjct: 95 LQWNHKLYKRVYYSKMISEVERKFAIDGRANNWILHQLDGKLRQYKSKLKKGYYKPNL 152
>01_04_0083 -
15838922-15839065,15839153-15839443,15839555-15839653,
15839733-15839825,15839913-15840116,15840209-15840459,
15841045-15841096,15841527-15841625,15842222-15842299
Length = 436
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 14 LQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNVEV 184
LQ H + +V I+E+ RKF + G NW ++ + + + LKKG PN+ +
Sbjct: 140 LQWNHKLYKRVYHPKMISEVERKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPNLSM 199
>01_06_0627 - 30705604-30706977
Length = 457
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 565 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 732
PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +2
Query: 62 ITEMGRKFVVGGNWKMNGDKN-----QINEIVNNLKKG 160
+ ++ ++F+ GGN +NGD + I E+V L+KG
Sbjct: 709 LNKLAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
>01_06_1102 -
34541341-34541561,34541691-34541769,34541880-34541929,
34542291-34542576
Length = 211
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 215 YVKTIIPDNVEVAARTVGSLQKEL 286
Y+K + PD+ E+ +RTV L+K L
Sbjct: 132 YMKVLEPDDEEMTSRTVSDLEKSL 155
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 750 INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 601
+ FA K + SS ++ V +T+ Y P+ I ++ + K + ILS G
Sbjct: 963 LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 175 C*GNCWCSCYLPVLCEDYHS**CRSCSQNCWKSPK 279
C G C C+CY+P L D++ +C+ NC P+
Sbjct: 896 CTGAC-CACYVPRLVGDFNR--RDACNYNCCIQPR 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,351,106
Number of Sequences: 37544
Number of extensions: 435894
Number of successful extensions: 1063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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