Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30671
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   248   6e-68
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.5  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  248 bits (606), Expect = 6e-68
 Identities = 120/169 (71%), Positives = 138/169 (81%)
 Frame = +1

Query: 256 QNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKV 435
           QN +K  KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHALESGLKV
Sbjct: 63  QNTYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGLKV 122

Query: 436 IACIGETLEERESGQD*GSCF*TIKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQ 615
           IACIGE LEERE+G+     F   KA+ + I + W+N+V+AYEPVWAIGTGKTATPQQAQ
Sbjct: 123 IACIGEKLEEREAGKTDEVVFRQTKAIANKI-NSWDNVVVAYEPVWAIGTGKTATPQQAQ 181

Query: 616 DVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLV 762
           +VH  LRNW S NV+ +V++ VRI YGGSVTA NAK+LA  KDIDGFLV
Sbjct: 182 EVHEKLRNWFSKNVNQTVAETVRIIYGGSVTAGNAKDLAKEKDIDGFLV 230



 Score =  109 bits (261), Expect = 4e-26
 Identities = 65/151 (43%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
 Frame = +2

Query: 71  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 250
           MGRKF VGGNWKMNG K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +
Sbjct: 1   MGRKFFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISI 60

Query: 251 AARTVGSLQKELLLVKFHPL*SKTLE*IGLYLVILKEEQFXXXXXXXXXXXXXXXXXXA* 430
           A +    + K     +  P  +  L+  G+  VIL   +                     
Sbjct: 61  AGQNTYKVAKGAFTGEISP--AMLLD-NGIPWVILGHSERRNIFGENDELIAEKVAHALE 117

Query: 431 KSLPVLV----RLSKRENLGKTEEVVFRQLK 511
             L V+     +L +RE  GKT+EVVFRQ K
Sbjct: 118 SGLKVIACIGEKLEERE-AGKTDEVVFRQTK 147


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 83  FVVGGNWKMNGDKNQINEIVNNLKKGP-LDPNVEVIVGVPAIYLSYVKTIIP 235
           F+  G W + G   + NEI  N    P +D    VI+    +Y  +   I+P
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYY-FFNLIVP 241


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 463 LRESHQYRQ*LSSQIQGHEQPFQQQ 389
           L+  H + Q  S+ +Q H +P+QQQ
Sbjct: 144 LQNHHHHLQ--STAVQDHHRPYQQQ 166


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 495 TTSSVLPRFSLFESLTNTGNDFQARFKGMSNL 400
           T   ++  F  FES+ N G   Q+  K  + +
Sbjct: 454 TVDKLITYFDHFESMLNNGVSIQSHAKAKNTM 485


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 495 TTSSVLPRFSLFESLTNTGNDFQARFKGMSNL 400
           T   ++  F  FES+ N G   Q+  K  + +
Sbjct: 454 TVDKLITYFDHFESMLNNGVSIQSHAKAKNTM 485


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 274 ETSNSSGCNFDIIRNDSLHIRQVNSRNTNN 185
           ++ N+  CN D  + + L I   NS+  N+
Sbjct: 61  KSKNNHHCNQDTEKLNQLEIESDNSKEVND 90


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 495 TTSSVLPRFSLFESLTNTGNDFQARFKGMSNL 400
           T   ++  F  FES+ N G   Q+  K  + +
Sbjct: 80  TVDKLITYFDHFESMLNNGVSIQSHAKAKNTM 111


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 264 TVLAATSTLSGMIVFT 217
           TV + TS LSG+++F+
Sbjct: 320 TVNSCTSMLSGIVIFS 335


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 264 TVLAATSTLSGMIVFT 217
           TV + TS LSG+++F+
Sbjct: 373 TVNSCTSMLSGIVIFS 388


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 475 QILSLRESHQYRQ*LSSQIQGHEQPFQQQ 389
           Q +  ++ HQ +Q  +  +   +QP QQQ
Sbjct: 416 QQMQAQQQHQQQQQQTQHVINAQQPQQQQ 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,310
Number of Sequences: 438
Number of extensions: 4912
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)