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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30666
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    46   2e-06
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    46   2e-06
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    42   3e-05
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    41   6e-05
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    40   1e-04
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    40   2e-04
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    38   8e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    37   0.001
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    36   0.003
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    35   0.004
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           33   0.016
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    32   0.029
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    31   0.050
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo...    31   0.066
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    30   0.15 
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    27   1.4  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    26   1.9  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   1.9  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   2.5  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   3.3  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        25   4.3  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   5.7  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   5.7  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   5.7  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    25   5.7  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    25   5.7  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    24   7.6  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    24   10.0 

>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 33/53 (62%)
 Frame = +1

Query: 133 PKNYIEKVVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRGSWTESLGCSP 291
           P + + +V A+YD+ A ++ ELSF++  +I VL+     WW+GS   ++G  P
Sbjct: 213 PASTVSRVRALYDFAATEQGELSFKKGDIILVLESVYKDWWKGSCKNAVGIFP 265


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +1

Query: 154 VVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRG 261
           V+A+YDY A   +E+SFQ+   + VL+  +DGWW G
Sbjct: 871 VIALYDYQAQIPEEISFQKGDTLMVLRTQEDGWWDG 906


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +1

Query: 154 VVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRG 261
           V A+YDY A   +E+SF++   I VLK  +DGWW G
Sbjct: 612 VSALYDYDAAIPEEISFRKGDTIAVLKLYEDGWWEG 647


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 41.1 bits (92), Expect = 6e-05
 Identities = 24/79 (30%), Positives = 36/79 (45%)
 Frame = +1

Query: 55  QNKMGSQYTSAVPAIVPDEEDLPGWVPKNYIEKVVAIYDYYADKEDELSFQESAVIYVLK 234
           Q++  S  +S      P     P    KN +E+V+A+YD+      +L F    VI VL+
Sbjct: 113 QSEASSVNSSTEKLPPPPSYPGPNTAHKN-VERVLAMYDFPGPDAGDLGFHAGEVIIVLE 171

Query: 235 KNDDGWWRGSWTESLGCSP 291
             ++ WWRG      G  P
Sbjct: 172 HVNNDWWRGELNGKEGIFP 190


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 157 VAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRG 261
           + IYDY  ++E+E+   E+  I +L+  DDGWW G
Sbjct: 731 IVIYDYSPEEENEIELVENEQIQILEFVDDGWWLG 765



 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 148 EKVVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRGSWTESLGCSP 291
           + V AIYDY A +++ELSF E  +I  +   D  WW G      G  P
Sbjct: 803 KSVKAIYDYQAQEDNELSFFEDEIIANVDCVDPNWWEGECHGHRGLFP 850



 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 255 EGVMDGVTGLFPGNYVE 305
           EG   G  GLFP NYVE
Sbjct: 839 EGECHGHRGLFPSNYVE 855


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 82  SAVPAIVPDEEDLPGWVPKNYIEKVVAIYDYYADKEDELSFQESAVIYVLKK--NDDGWW 255
           +A  A VP     P        E VVA+YDY A    +LSF     I V+ +  N + WW
Sbjct: 388 AAAAAAVPVPPPAPAPAAAPAAEHVVALYDYAAQAAGDLSFHAGDRIEVVSRTDNQNEWW 447

Query: 256 RGSWTESLGCSPG 294
            G    + G  PG
Sbjct: 448 IGRLNGAQGQFPG 460



 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 258 GVMDGVTGLFPGNYVE 305
           G ++G  G FPGNYV+
Sbjct: 449 GRLNGAQGQFPGNYVQ 464


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 37.5 bits (83), Expect = 8e-04
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +1

Query: 106 DEEDLPGWVPKNYIE------KVVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRGSW 267
           D+E++ G VP NYI       K+ A+YDY     DE+SFQ    +      D  W    +
Sbjct: 64  DDEEI-GIVPSNYITEAEPSTKMKALYDYTQQSVDEISFQADQTLDCYGDTDSDWILVGF 122

Query: 268 TESLGCSP 291
             + G +P
Sbjct: 123 NNNFGLAP 130



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 163 IYDYYADKEDELSFQES-AVIYVLKKNDDGWWRGSWTESLGCSPGTMWNP 309
           +YD+ A+  DEL+ + +  V+ V       WW+ S     G  P     P
Sbjct: 516 LYDFIAEAADELTVKANMRVVIVNDTASSDWWKCSVDGKEGVVPSNFIKP 565



 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 264 MDGVTGLFPGNYVEPCV*AKSKCL*TNSKTNQ 359
           +DG  G+ P N+++P     +K   ++SK+ Q
Sbjct: 551 VDGKEGVVPSNFIKPDTEGDAKSPPSSSKSGQ 582


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 151 KVVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRGSWTESLG 282
           +VVA+Y Y +   D+L F    VI V+   D  W+ G++ +S G
Sbjct: 7   RVVALYPYRSSFSDDLEFDPGQVIDVVSNLDGDWYTGTYVDSDG 50


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 35.5 bits (78), Expect = 0.003
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +1

Query: 40   ANFSLQNKMGSQYTSAVPAIVPDEEDLPGWVPKNYIEKVVAIYDYYADKEDELSFQESAV 219
            +N S  +   +   S   A+ P     P  V K   +  +A+YD+     +E++ ++  +
Sbjct: 1075 SNISKPSAPVANNVSKPSAVPPPPPPPPAEVEKK--DLYLALYDFAGRSPNEMTIKKDEI 1132

Query: 220  IYVLKKNDDGWWRGSWTESLGCSPGT 297
            I +++K   GWW      + G  P T
Sbjct: 1133 IEIVQKEPSGWWLALKNGAEGWVPAT 1158


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 151 KVVAI-YDYYADKEDELSFQESAVIYVLKKNDDGWWRG 261
           KVV + Y +  + E+EL  ++  ++ VLK+ D+GWW G
Sbjct: 424 KVVRMKYSFEPETENELKLKKGDLLLVLKEIDEGWWVG 461



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 255 EGVMDGVTGLFPGNYVEP 308
           +GV  G TG+FP NY  P
Sbjct: 467 DGVFTGNTGMFPSNYCVP 484


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 33.1 bits (72), Expect = 0.016
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 154 VVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRG 261
           V A+Y Y A    E+       + VL +  DGWW+G
Sbjct: 357 VRALYAYKATLPSEIDLNVDDTLVVLNRQKDGWWKG 392


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 130 VPKNYIEKVVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRG 261
           +PK     V A+Y +  ++E +L F E  +I  L   D  WW G
Sbjct: 3   IPKQLPCMVRALYAWPGEREGDLKFTEGDLIECLSIGDGKWWIG 46


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 31.5 bits (68), Expect = 0.050
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 154 VVAIYDYYADKEDELSFQESAVIYVLKKN-DDGWWRG 261
           V A+Y Y A  + ELS QE  +I V  +N  +GW  G
Sbjct: 589 VKALYAYTAQSDMELSIQEGDIIQVTNRNAGNGWSEG 625



 Score = 30.7 bits (66), Expect = 0.087
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 255 EGVMDGVTGLFPGNYV 302
           EG+++GVTG FP NYV
Sbjct: 624 EGILNGVTGQFPANYV 639


>SPCC24B10.13 |skb5||Shk1 kinase binding protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 31.1 bits (67), Expect = 0.066
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 139 NYIEKVVAIYDYYADKEDELSFQESAVIYVLKKNDDGW 252
           N +   VA+YD+    ++EL F     + +L ++ DGW
Sbjct: 80  NVLADAVALYDFEPLHDNELGFTTGQRLCILSESSDGW 117


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 160 AIYDYYADKEDELSFQESAVIYVLKK--NDDGWWRG 261
           A+Y +  ++  +LSFQ+  +I ++++  + D WW G
Sbjct: 378 AMYSFAGEQPGDLSFQKGDIIDIVERSGSHDDWWTG 413


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +1

Query: 28  RPHHANFSLQNKMGSQYTSAVPAIVPDEEDLPGWVPKNYIEKVVAIYDYYADKEDELSFQ 207
           RP+  + S++  +   +   +   +  EED+P  V +  + K+V    Y   +   L F+
Sbjct: 112 RPNETDISVEGVVTRVHERHISVALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFK 171

Query: 208 ESAVIY 225
            S   Y
Sbjct: 172 RSIPEY 177


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 133 PKNYIEKVVAIYDYYADKEDELSFQ 207
           P NYI+++  +Y +   K  ELSF+
Sbjct: 516 PHNYIKRMGDVYSFAESKNAELSFR 540


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 106 DEEDLPGWVPKNYIEKVVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWRGSWTESLGC 285
           DE D+     K+ +  + AI   + D+  E+  +  A  Y+LK N + WW      ++  
Sbjct: 437 DESDITSLFQKHIMSDISAIP--WIDEPVEVETKTIAK-YLLKLNGNSWWTVGSQPAVNG 493

Query: 286 SPGTMWNPVF 315
           +P    +PVF
Sbjct: 494 APSA--DPVF 501


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 175 NNRRSPQLFLCNSLAPNLADLLRRVQ 98
           ++ +SP LFLC S+A  L  +L++ Q
Sbjct: 664 HSAQSPSLFLCASVARVLDSILKKFQ 689


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 208 ESAVIYVLK-KNDDGWWRGSW 267
           E+A+ YV+K +  DG W GSW
Sbjct: 556 ENALEYVVKMQRPDGSWYGSW 576


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 91  PAIVPDEEDLPGWVP 135
           P I PDE+D  GW P
Sbjct: 60  PNIKPDEKDEAGWTP 74


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 222 DNCTFLEGQFIFLVSVIIVDRHNFFYVI 139
           +NCTF+ G  +  +    ++   F Y+I
Sbjct: 27  ENCTFVNGDVLLEIPSFFIESLQFHYLI 54


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 283 CSPGTMWNPVFRQK 324
           C+PGT+W+P + ++
Sbjct: 173 CAPGTIWSPAWDER 186


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 228 DIDNCTFLEGQFIFLVSVIIVDRHNFFYVILWHPTWQIFF---VGYNSGYGRR 79
           ++++ T +  Q  FLV  +  D     Y  L H  W + +   V Y +G+ ++
Sbjct: 187 EVEDVTEIPDQSAFLVRFVYRDEAIAAYTALKHSAWPVLWAENVTYQNGHYKK 239


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 253 WRGSWTESLGC 285
           W+G W E LGC
Sbjct: 265 WKGKWLEILGC 275


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 18/66 (27%), Positives = 23/66 (34%)
 Frame = +1

Query: 79  TSAVPAIVPDEEDLPGWVPKNYIEKVVAIYDYYADKEDELSFQESAVIYVLKKNDDGWWR 258
           T+    I P     P    K     V AIY +    E EL      VI V ++    W+ 
Sbjct: 259 TTNTEKISPTPFSTPKRKSKKETVFVKAIYSFTGRNEKELDLHTGDVIQVSEQLGPDWYM 318

Query: 259 GSWTES 276
           G    S
Sbjct: 319 GEKVNS 324


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = +1

Query: 79  TSAVPAIVPDEEDLPGWVPKNYI---EKVVAIYDYYADKEDELSFQESAVIYVLKKNDDG 249
           T+A   +   E+D  GW         +K+V   D+       ++  +    YV +K  DG
Sbjct: 29  TTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88

Query: 250 WWR 258
            W+
Sbjct: 89  TWK 91


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
 Frame = +1

Query: 52  LQNKMGSQYTSAVPAIVPDEEDLPGWVPKNYIEKVVAIYDYYADKEDELSFQESAVIYVL 231
           L+N+M  +Y   +         + G   +N +++++++  +   K  + + Q   +IY +
Sbjct: 548 LKNRMSERYKHLMNIPANFRLLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDIIYKI 607

Query: 232 KKNDDGWWRGSWTESLGCSPG-TMWNPVF--RQKVNV 333
           K   DG    ++      S   T+ NP    R+K NV
Sbjct: 608 KTTSDGDIERAYLSQERISRAKTIMNPFILRRRKENV 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,218
Number of Sequences: 5004
Number of extensions: 35291
Number of successful extensions: 123
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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