Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30666
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 31 0.25
05_02_0014 - 5602425-5602481,5603218-5603307,5603711-5603950 29 1.0
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338... 28 2.4
01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950 28 2.4
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 28 3.1
10_08_0257 - 16255063-16255183,16255258-16255334,16255861-162559... 27 4.1
09_06_0298 - 22117451-22118698 27 4.1
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 27 4.1
03_02_0290 - 7130304-7130416,7130999-7131804,7132730-7132937,713... 27 4.1
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 27 7.2
12_01_0622 + 5124213-5125292,5126820-5128685 27 7.2
09_04_0294 - 16444565-16445137,16445999-16446256,16446609-164471... 27 7.2
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 26 9.5
01_06_0407 + 29124186-29124498,29124865-29124986 26 9.5
01_01_0454 + 3375593-3376105 26 9.5
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 31.5 bits (68), Expect = 0.25
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 223 YVLKKNDDGWWRGSWTESLGCSPGTMWNPVFRQKVN 330
Y+ + ++GW+RG E + C G W + ++K N
Sbjct: 138 YIQNEENEGWYRGPGHEGMHCQ-GRRWGGIMKEKRN 172
>05_02_0014 - 5602425-5602481,5603218-5603307,5603711-5603950
Length = 128
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 118 LPGWVPKNYIEK--VVAIYDYYADKEDELSFQESAVIYVL 231
L WV Y K V YDY+A++ED + + A + VL
Sbjct: 20 LQAWVCGEYARKGFVEVDYDYFANREDAIRLNKEAQVEVL 59
>04_03_0128 -
11530618-11530838,11532683-11532809,11533746-11533892,
11533981-11534082,11534207-11534332,11535507-11535584,
11535780-11535827,11536005-11536193
Length = 345
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 106 DEEDLPGWVPKNYIEKVV-----AIYDYYADKEDELSF 204
+EE+ PGW+P +I +V IY YY L+F
Sbjct: 37 EEEERPGWLPDGWIMEVYQGDDGTIYRYYTSPISGLTF 74
>01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950
Length = 369
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 233 RRMTTAGGGGHGRSHWVVPRELCGT 307
R+ + GGGG R+ W VP + CGT
Sbjct: 341 RKKKSGGGGGDRRAGWSVPAK-CGT 364
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 249 LVEGVMDGVTGLFPGNYVEPCV*AKSK 329
+VE V +GVT + PG++V PC A+ +
Sbjct: 76 IVESVGEGVTEVQPGDHVIPCYQAECR 102
>10_08_0257 -
16255063-16255183,16255258-16255334,16255861-16255973,
16256006-16256016,16256328-16256337,16256423-16256486,
16256582-16256646,16257339-16257474
Length = 198
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 326 TFCLNTGFHIVPGEQPSDSVHDPLHQPSSF 237
TF T IVP P+D DP+ QP F
Sbjct: 127 TFVGKTAGKIVPARGPADFGWDPVFQPDGF 156
>09_06_0298 - 22117451-22118698
Length = 415
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 145 CNSLAPNL-ADLLRRVQ*RVRPTCTVIPFCSAMKSWHGAV 29
C S P+L ADL+R + R R + F + K W AV
Sbjct: 8 CVSRWPDLPADLIREISGRFREAADYVHFHAVCKPWRDAV 47
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 27.5 bits (58), Expect = 4.1
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Frame = +1
Query: 10 AHDAFGRPHHANFS-LQNKMGSQYTSAVPAIVPDE-------EDLPGWVPKNY----IEK 153
A DAFGR ++S + ++Y A+ A + D+ E L P + +E
Sbjct: 56 ARDAFGRDGGRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPLDEAAGDMED 115
Query: 154 VVAIYDYYADKEDELSFQESAVIYVLKKNDDGW 252
V A ++YYAD + L ++ A I + +N + +
Sbjct: 116 VAACFEYYADLAEALDGKQRAPISLPMENFESY 148
>03_02_0290 -
7130304-7130416,7130999-7131804,7132730-7132937,
7132983-7133153,7134091-7134187,7134814-7134873
Length = 484
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +1
Query: 46 FSLQN-KMGSQYTSAVPAIVP---DEEDLPGWVPKNYIE 150
FSL N GS +S + ++VP E PGW+P N E
Sbjct: 380 FSLANVSAGSYLSSFIVSLVPVFTAREGSPGWIPDNLNE 418
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 2 MNSPTMLLADRTMPTFHCRTKWDHSTRRPYPLLYPTKKICQ 124
+++P M L+ + +PT + T D + +P ++ ++ICQ
Sbjct: 336 LDAPIMCLSSQDVPTPYAATLEDATVVQPAQIVAAVEQICQ 376
>12_01_0622 + 5124213-5125292,5126820-5128685
Length = 981
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 97 IVPDEEDLPGWVPKNYIEKVVAIYDY-YADKEDELSFQESAVI 222
IV D+ P + Y E+VVA+ + DEL+FQES +I
Sbjct: 147 IVVDDHHHPS---RTYHERVVAMLPGGHGSSSDELAFQESEII 186
>09_04_0294 -
16444565-16445137,16445999-16446256,16446609-16447106,
16449641-16449676,16451057-16451269,16451971-16452060,
16453627-16453851
Length = 630
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 248 AGGGGHGRSHWVVPRELCG 304
AGGGG + H VPREL G
Sbjct: 11 AGGGGPPQQHPDVPRELLG 29
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 231 KEE*RRLVEGVMDGVTGL 284
KEE R V GVMDG TG+
Sbjct: 425 KEEVARCVAGVMDGETGM 442
>01_06_0407 + 29124186-29124498,29124865-29124986
Length = 144
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 199 SFQESAVIYVLKKNDDGWWRGSWTESLGCSPGTMWN 306
+ + + VL + D R S +S GC+P +WN
Sbjct: 54 NISQQCICAVLNFSKDQGERKSMDQSRGCNPAGVWN 89
>01_01_0454 + 3375593-3376105
Length = 170
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 233 RRMTTAGGGGHGRSHWV 283
+R T+ GGGG GR H V
Sbjct: 92 KRRTSTGGGGAGRGHHV 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,215
Number of Sequences: 37544
Number of extensions: 243195
Number of successful extensions: 883
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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