Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30665
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   2.1  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   3.6  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   8.3  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +1

Query: 91  VFDQCMLENLNLP---RPGFGYFCEARVHDTKRPKPLPEPKVXYPDATPALPEDAEKNHQ 261
           V D  +   +NLP    P  GYF     + +  P P+  P   Y  A+  + E +     
Sbjct: 218 VADLLIPAGVNLPGAQEPNRGYFSPMHTYSSAVPGPISVPSAPYGRASSTIAEVSPMYGS 277

Query: 262 GSAPVST 282
            +AP ++
Sbjct: 278 HAAPYAS 284


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 390 SLVFQIISLGGVVRVI*SKA----LDRVLFCFLIFFVLN 494
           S+V+ +ISL   +R I S+     +   LFC+  FF+LN
Sbjct: 220 SIVYGLISLWWAIRCICSRTKLHLVQVCLFCWFSFFILN 258


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 390 MSDFYSNSKFYNWQHSIVSL*HVGGV 313
           M +FY +SK  +W+  IVS  H+ G+
Sbjct: 515 MQNFYQDSKSNHWEAQIVSY-HISGL 539


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 61   LSGIAGKTQGVFDQCMLENLNLPRPGFGYFCEARVHDTKRPKPLPEPK 204
            + GI G      D+   +  ++P PG G    AR   TK P P+ + K
Sbjct: 1357 IHGIVGYVSTAMDK---QGRSVPAPGQGILTGAREIATKTPLPIVDLK 1401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,234
Number of Sequences: 5004
Number of extensions: 43553
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)