Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30665
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0039 - 7621613-7622695 25 1.6
05_01_0206 + 1487034-1489430 29 2.8
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701... 29 2.8
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.7
03_06_0416 - 33780911-33781861 29 3.7
10_06_0173 - 11478150-11478578,11478737-11478743,11481152-11481345 28 4.9
07_01_0084 + 657846-658538,660652-661920 28 6.5
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 27 8.5
06_03_1447 + 30233090-30233776 27 8.5
06_03_1436 + 30148325-30149011 27 8.5
>05_03_0039 - 7621613-7622695
Length = 360
Score = 25.0 bits (52), Expect(2) = 1.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +1
Query: 181 PKPLPEPK---VXYPDATPALPEDAEKNHQGSAP 273
PKP PEPK YP+ P L + + + AP
Sbjct: 312 PKPKPEPKPEPKPYPEPKPKLKPEPKPGPKPIAP 345
Score = 23.4 bits (48), Expect(2) = 1.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 127 PRPGFGYFCEARVHDTKRPKPLPEPK 204
P+P E + H +P P+PEP+
Sbjct: 286 PKPKPDPKLEPKPHPEPKPHPMPEPE 311
>05_01_0206 + 1487034-1489430
Length = 798
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = +1
Query: 127 PRPGFGYFCEA-------RVHDTKRPKPLPEPKVXYPDATPA 231
P P G FC+ R DT P P P P+ P ATP+
Sbjct: 310 PLPDSGRFCKVSGDVICRRFCDTSPPPPPPSPRTPSPPATPS 351
>04_03_0874 +
20467608-20468306,20468575-20468736,20470083-20470160,
20470636-20470714,20470809-20470954,20471064-20471132,
20471262-20471430,20471526-20471776
Length = 550
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -1
Query: 256 GSSRRLLVELAWRPGRXPSAPVEASVSWYRGLEPRRNIQSQGEVSLDSQA-CTDQKHLES 80
GSS + + RP P V +S S R PR S+G S D Q C + +S
Sbjct: 174 GSSNNARIGSSRRPVAWPPVAVRSSASGSRPSSPRSLADSEGYNSADEQGPCYASNYYDS 233
Query: 79 CRQ 71
R+
Sbjct: 234 ERE 236
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 88 GVFDQCMLENLNLPRPGFGYFCEARVHDTKRPK-PLPEPKVXYPDATPA 231
G D + +N+ LP+PG + + +T P P V PDA PA
Sbjct: 561 GQQDIVLQQNVPLPKPGDAAHLDKQKQETPPASHTFPTPGVKIPDANPA 609
>03_06_0416 - 33780911-33781861
Length = 316
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 274 REPSLGGSSRRLLVELAWRPGRXPSAPVE-ASVS 176
+E S GG R+ +E RP + PSAP E ASVS
Sbjct: 176 QEISTGGGHVRVALECEKRPKKLPSAPPEQASVS 209
>10_06_0173 - 11478150-11478578,11478737-11478743,11481152-11481345
Length = 209
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -1
Query: 259 GGSSRRLLVELAWRPGRXPSAPVEASVSWYRGLEPRRNIQSQGEVSLDSQACTD 98
G + RR V L WR + + W RG N S E+ + + D
Sbjct: 37 GAAERRQAVTLGWRAKEAAAGAWGVQIRWCRGDASENNTNSPEELQIQDELEAD 90
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/43 (23%), Positives = 27/43 (62%)
Frame = -2
Query: 591 IYFSYNNXYLLFIFLQSSTLDIEGIIIQIFILYSTQKISKSKT 463
+Y+S+++ + F+++ + T ++G FI +K+++S+T
Sbjct: 393 LYYSFDSGVVHFVYMSTETNFVQGSDQYNFIKADLEKVNRSRT 435
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 446 FTSYNAHHTAQRDYLKHQRCQISTQIVNFIIGN 348
FT+ + H +A RDYL+ + +N +G+
Sbjct: 636 FTAISQHQSAARDYLEAYKLNPENPFINLCVGS 668
>06_03_1447 + 30233090-30233776
Length = 228
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 426 PHRPARLFETPKMSDFYSNSKFYNWQHSIVSL*HVGGVFAVSRTIPSSSRNGSR 265
P RP + F S S W H+ L H F +S + P + R G+R
Sbjct: 13 PARPPLAVDEEYNQAFRSKSFLDLWSHAHHHLTHTFSSFKLSTSTPCAGRGGAR 66
>06_03_1436 + 30148325-30149011
Length = 228
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 426 PHRPARLFETPKMSDFYSNSKFYNWQHSIVSL*HVGGVFAVSRTIPSSSRNGSR 265
P RP + F S S W H+ L H F +S + P + R G+R
Sbjct: 13 PARPPLAVDEEYNQAFRSKSFLDLWSHAHHHLTHTFSSFKLSTSTPCAGRGGAR 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,144,204
Number of Sequences: 37544
Number of extensions: 282802
Number of successful extensions: 855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -