Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30665
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical ...    34   0.066
U00055-2|AAA50721.1|  223|Caenorhabditis elegans Hypothetical pr...    31   0.47 

>AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.5 protein.
          Length = 183

 Score = 34.3 bits (75), Expect = 0.066
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 85  QGVFDQCMLENLNLPRPGFGYFCEARVHDTKRPKP 189
           Q   D C+  NLNL RP  GYF +  V+D+    P
Sbjct: 108 QKELDACVEANLNLTRPKLGYFSKLHVYDSATAAP 142


>U00055-2|AAA50721.1|  223|Caenorhabditis elegans Hypothetical
           protein R02F2.5 protein.
          Length = 223

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 181 PKPLPEPKVXYPDATPALPEDAEKNHQGSAPVSTG 285
           P P P P+   P ATPA P  A    Q +APV  G
Sbjct: 124 PAPTPAPQAA-PQATPAAPAQAYPQQQQAAPVVYG 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,104
Number of Sequences: 27780
Number of extensions: 241498
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)