Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30660
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 103 7e-23
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 103 7e-23
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 31 0.78
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 7.3
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 7.3
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 7.3
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 27 7.3
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 27 9.6
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 103 bits (248), Expect = 7e-23
Identities = 46/86 (53%), Positives = 64/86 (74%)
Frame = +3
Query: 243 LPASLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 422
LPA LCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE + NF+E
Sbjct: 171 LPA-LCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSE 229
Query: 423 RYEELRKHWGGGVLGNKSNARIAKLE 500
R+EE+RKHWGGGV+ KS+A+ K+E
Sbjct: 230 RHEEIRKHWGGGVMSAKSDAKKLKIE 255
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +2
Query: 2 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181
D +A+ FK+L+KYRPE+ RPNT+R G NT+T+LV
Sbjct: 89 DSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLV 148
Query: 182 EKKKAHL 202
E ++A L
Sbjct: 149 ETRRAQL 155
Score = 35.1 bits (77), Expect = 0.036
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 199 LVVIAHDVDPIELVLFLPAYAVKW 270
LV+IAHDV+P+E+VL LPA K+
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKY 178
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 103 bits (248), Expect = 7e-23
Identities = 46/86 (53%), Positives = 64/86 (74%)
Frame = +3
Query: 243 LPASLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 422
LPA LCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE + NF+E
Sbjct: 151 LPA-LCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSE 209
Query: 423 RYEELRKHWGGGVLGNKSNARIAKLE 500
R+EE+RKHWGGGV+ KS+A+ K+E
Sbjct: 210 RHEEIRKHWGGGVMSAKSDAKKLKIE 235
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +2
Query: 2 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181
D +A+ FK+L+KYRPE+ RPNT+R G NT+T+LV
Sbjct: 89 DSQSARQAFKLLDKYRPESTEVTK--------------------RPNTVRHGVNTITRLV 128
Query: 182 EKKKAHL 202
E ++A L
Sbjct: 129 ETRRAQL 135
Score = 35.1 bits (77), Expect = 0.036
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 199 LVVIAHDVDPIELVLFLPAYAVKW 270
LV+IAHDV+P+E+VL LPA K+
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKY 158
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = -2
Query: 100 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLV 2
SF SFP QP+ C +++P F+ N+EKA + C ++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLII 198
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = +2
Query: 248 CQLMP*----NGRTILHCQGQVPPRCTCT 322
CQ+MP G+ I C VPP+C CT
Sbjct: 40 CQVMPTPEIGGGQMICTCSPPVPPKCVCT 68
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 169 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 38
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 169 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 38
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 169 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 38
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 406 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 266
L+ T E +S D F V V TS+P +D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 2 DKTTAKGLFKILEKYRPET 58
D +A+ FK+L+KYRPE+
Sbjct: 192 DSHSARQAFKLLDKYRPES 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,470
Number of Sequences: 27780
Number of extensions: 193337
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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