Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30659
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    30   0.32 
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   2.2  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   9.1  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   9.1  

>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 245 RRTHRDP-VGVDISAQSPDPLGLVQVGLAPQMPDI 346
           R    DP V +D+    P P GLV+ G+AP  P++
Sbjct: 34  RLLRNDPNVKIDMFESRPVPFGLVRYGVAPDHPEV 68


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 60  GRVLHIELLPEGSCRTRSHCLHKAQCNNV 146
           G+V  +E   +GSC TR    H+  CN V
Sbjct: 123 GKVSVLEFKDDGSCDTRIFTAHEPGCNAV 151


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 272 PRQDPGGSDAVARELD---ELNAKYQRLLDMLYER 177
           PR +   SD+V+   D   ++N +YQR +  +Y+R
Sbjct: 273 PRDNVVASDSVSENTDSIQQINDEYQRKIAYMYDR 307


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 117 NGSSFGKILPAGVQYARHDHRAHVHLTIYHRKIRENLTY 1
           NG+ F  I   G+ +  HD      L  Y  KI E+L Y
Sbjct: 296 NGAYFTAIAQRGILHRAHDDAFVEELYRYTHKIFEDLKY 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,093
Number of Sequences: 5004
Number of extensions: 66074
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)