Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30659
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379... 39 0.005
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449... 35 0.083
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 31 1.3
01_01_1127 + 8930593-8932681,8932812-8933401 29 4.1
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 29 5.4
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 28 7.2
02_02_0435 + 10206569-10206730,10207126-10207230,10207897-102079... 28 7.2
10_03_0035 - 7265037-7265455,7265684-7265812,7265909-7265951,726... 28 9.5
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 28 9.5
05_01_0110 - 741968-742279 28 9.5
>06_03_0022 -
15536811-15536899,15537485-15537664,15537706-15537982,
15538680-15538883,15539431-15539496,15539933-15539953,
15541622-15541731,15543244-15544236,15544928-15544955,
15545035-15545093,15545177-15545204,15545453-15545475,
15545784-15545853,15546980-15547033,15547127-15547169,
15548126-15548175
Length = 764
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 155 WQQRFASISRKACPAASGTSHSAHPIPGPQRRTHRDPVGVDISAQSPDP 301
W F S+ RK+ + S +SH P P P+RR + V S S DP
Sbjct: 364 WGMDFCSLHRKSLMSGSNSSHEMLPAPPPKRRAKKTKTAVGPSGLSSDP 412
>07_01_0604 -
4491884-4491993,4493030-4493225,4494269-4494326,
4494459-4494613,4495092-4495115,4495377-4495489,
4499943-4500129
Length = 280
Score = 34.7 bits (76), Expect = 0.083
Identities = 29/93 (31%), Positives = 41/93 (44%)
Frame = -3
Query: 362 GPPVTRCQAFEAPGRPGPGREDPAIGPRYRPRQDPGGSDAVARELDELNAKYQRLLDMLY 183
G P A + P G +DP +G P Q+ G AVA ++ E+ A + +
Sbjct: 45 GIPKLSSMAGNSTAHPIKGEDDPDLGGEVDPAQEVGADKAVAHDVAEVVA----VAENEV 100
Query: 182 ERLRRIAAANPGDIVTLRLVEAMAPRSARSFRQ 84
ERL RI A D+ V A A R+FR+
Sbjct: 101 ERLGRIGEA---DVEVETEVAAGAQPKKRTFRK 130
>04_04_1704 - 35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 290 IGPRYRPRQDPGGSDAVARELDELNAKYQRLLDMLYERLRRIAAANPGDIVTL--RLVEA 117
IG + R + + + ++D+L+ ++ D + ER++R+ A+ G+++ +VE
Sbjct: 1554 IGMLHENRWERSHLEKIRMQIDDLHEEHMAKFDEMLERIKRMELADEGELIAKFGEMVER 1613
Query: 116 MAPR 105
M R
Sbjct: 1614 MRQR 1617
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 169 ESLLPIPETLLHCALWRQWLLVRQDPSGRSSICKTRPQSTRTP 41
ES +P+P+TLL A Q + DP R++ +TP
Sbjct: 190 ESFVPVPDTLLEKARQEQGHVTALDPKSRAAAAGAETPWAQTP 232
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 158 QQRFASISRKACPAASGTSHSAHPIPGPQ 244
QQ + + PA SG+ H PIPGP+
Sbjct: 335 QQNTSGQGHVSSPATSGSDHVNKPIPGPR 363
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 323 GRPGPGREDPAIGPRYRPRQDPGGSDAVARELDELNAKYQRL--LDMLYERLR 171
G P G + +G Y P D GG + R L + K + L LD ++ +LR
Sbjct: 149 GDPEDGTAEEVVGQAYLPADDVGGGKEIDRWLPLCDEKRKPLEGLDKVHVQLR 201
>02_02_0435 +
10206569-10206730,10207126-10207230,10207897-10207986,
10208256-10208369,10208477-10208530,10208951-10209067,
10209530-10209639,10209752-10209825,10209921-10209982,
10210240-10210435,10210506-10210569,10210789-10210832,
10210974-10211116,10211521-10211751
Length = 521
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 272 VDISAQSPDPLGLVQVGLAPQMPD 343
VDI + P P GLV+ G+AP P+
Sbjct: 64 VDIIDRLPTPFGLVRSGVAPDHPE 87
>10_03_0035 -
7265037-7265455,7265684-7265812,7265909-7265951,
7266321-7266344
Length = 204
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 165 RCCQSRRHCYIAPCGGNGSS 106
RCC + CY P GG G S
Sbjct: 169 RCCGAAPPCYCVPIGGGGCS 188
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 227 PIPGPQRRTHRDPVGVDISAQSPDPLG 307
P P P+R T R+P GVD + P G
Sbjct: 37 PPPQPRRSTRRNPAGVDSGDEGTAPGG 63
>05_01_0110 - 741968-742279
Length = 103
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 362 GPPVTRCQAFEAPGRPGPGREDPAIGPRYRPRQ 264
G P R A PG P P P IGP +RPR+
Sbjct: 74 GSPCHRLGAAPPPGAPTP----PPIGPPHRPRR 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,459,307
Number of Sequences: 37544
Number of extensions: 511174
Number of successful extensions: 1596
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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