Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30659
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 120 LHKAQCNNVSGIGSSDSPQSLVKHVQQPLVLR 215
           LH  Q  NV+ +    + +S +KH +  + LR
Sbjct: 349 LHSFQMKNVTIVDHHTASESFMKHYENEMRLR 380


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 338 AFEAPGRPGPGREDPAIGPR 279
           AFE    PGPG + P   PR
Sbjct: 51  AFEPRRNPGPGSKGPRDFPR 70


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 362 GPPVTRCQAFEAPGRPGPGREDPAIGP 282
           G  V  C     P  P PG +D   GP
Sbjct: 464 GTTVAPCFEEPLPSLPLPGADDDLFGP 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,681
Number of Sequences: 438
Number of extensions: 4820
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)