Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30657
         (787 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ252125-1|CAB64387.1|  470|Drosophila melanogaster Sox14 protei...    31   2.4  
AE013599-3763|AAF47126.2|  669|Drosophila melanogaster CG3090-PB...    31   2.4  
AE013599-3762|AAM68286.1|  669|Drosophila melanogaster CG3090-PA...    31   2.4  

>AJ252125-1|CAB64387.1|  470|Drosophila melanogaster Sox14 protein
           protein.
          Length = 470

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 143 RPLNTFHIWVQSERQQLC-AVSNLHQFE 223
           RP+N F +W Q ER+++C    +LH  E
Sbjct: 187 RPMNAFMVWSQMERRKICERTPDLHNAE 214


>AE013599-3763|AAF47126.2|  669|Drosophila melanogaster CG3090-PB,
           isoform B protein.
          Length = 669

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 143 RPLNTFHIWVQSERQQLC-AVSNLHQFE 223
           RP+N F +W Q ER+++C    +LH  E
Sbjct: 189 RPMNAFMVWSQMERRKICERTPDLHNAE 216


>AE013599-3762|AAM68286.1|  669|Drosophila melanogaster CG3090-PA,
           isoform A protein.
          Length = 669

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 143 RPLNTFHIWVQSERQQLC-AVSNLHQFE 223
           RP+N F +W Q ER+++C    +LH  E
Sbjct: 189 RPMNAFMVWSQMERRKICERTPDLHNAE 216


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,009,944
Number of Sequences: 53049
Number of extensions: 688754
Number of successful extensions: 1441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)