Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30657
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian ...    29   2.9  
AF016655-1|AAK72055.3|  318|Caenorhabditis elegans Serpentine re...    28   8.7  

>U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 1 protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 143 RPLNTFHIWVQSERQQLC 196
           RP+N F +W Q ER+++C
Sbjct: 95  RPMNAFMVWSQMERRKIC 112


>AF016655-1|AAK72055.3|  318|Caenorhabditis elegans Serpentine
           receptor, class h protein297 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = -1

Query: 454 FICNPILSGFQFCIIFLLKVGTYVE*VSASQLISIIIFNL*SRYTNNY 311
           F+C P+ +G+Q  I+  + V T +  ++   L  ++  ++ + + N Y
Sbjct: 68  FLCAPVFAGYQLGILSWIGVPTDISELTIRTLYMLVPISIITMFENRY 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,653,328
Number of Sequences: 27780
Number of extensions: 366269
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)