Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30656
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.4  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 413 HGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 508
           H G+KPY  S  D + V++ + +    V T E
Sbjct: 32  HTGEKPYHCSHCDRQFVQVANLRRHLRVHTGE 63


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 517 EHDFQCLYTCLILVIPYF 464
           +HD QC  TC++ ++  F
Sbjct: 62  DHDLQCYTTCIMKLLRTF 79


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 813 QVDLLQFRVLSHR 775
           +V+L QFRVL HR
Sbjct: 182 EVELPQFRVLGHR 194


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 338 WQLGASISNFTLEGHEKGVNCVDYYH 415
           WQ  AS+ N    G    +NC +Y H
Sbjct: 15  WQNSASLENDNEFGFSYLLNCKNYDH 40


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 664 TMHGSNNVAVGYDEGTIMIKVGREEPA 744
           T +G NNV     E T + K+G EE A
Sbjct: 313 TNNGVNNVEAVQKELTDLGKLGEEEKA 339


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 664 TMHGSNNVAVGYDEGTIMIKVGREEPA 744
           T +G NNV     E T + K+G EE A
Sbjct: 313 TNNGVNNVEAVQKELTDLGKLGEEEKA 339


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 664 TMHGSNNVAVGYDEGTIMIKVGREEPA 744
           T +G NNV     E T + K+G EE A
Sbjct: 313 TNNGVNNVEAVQKELTDLGKLGEEEKA 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,287
Number of Sequences: 438
Number of extensions: 5390
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)