Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30655
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AL023828-18|CAA19462.2|  742|Caenorhabditis elegans Hypothetical...    26   7.3  
AL023828-17|CAA19463.2|  826|Caenorhabditis elegans Hypothetical...    26   7.3  
AJ132699-1|CAA10735.1|  742|Caenorhabditis elegans centaurin bet...    26   7.3  
AJ132698-1|CAA10734.1|  826|Caenorhabditis elegans centaurin bet...    26   7.3  

>AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical
           protein T12F5.2 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 186 VNSIIVSLVS*F*FHLICFFYNFLKLSLTPKKENYLKIIST 308
           + S+IVS+ S   F+ +C F+ F+   +      Y K +ST
Sbjct: 266 IGSVIVSIFSAI-FNWLCMFFKFISQMIFGTGSTYYKNVST 305


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 197 NCFISKLVLISSHMFFL*FLKIKSYP-KKRELSENYF 304
           +CF+    +++    F+ +LKI+++P K + L  N+F
Sbjct: 179 SCFMVSCTVVTMISNFISYLKIRTFPFKPKNLEYNFF 215


>AL023828-18|CAA19462.2|  742|Caenorhabditis elegans Hypothetical
           protein Y17G7B.15b protein.
          Length = 742

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 129 VNRVDNLIRIVIVANGNEKVNSIIVS 206
           ++ +DN +R V++A GN +VN I ++
Sbjct: 420 MDSIDNELRDVLLALGNRQVNEIFLA 445


>AL023828-17|CAA19463.2|  826|Caenorhabditis elegans Hypothetical
           protein Y17G7B.15a protein.
          Length = 826

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 129 VNRVDNLIRIVIVANGNEKVNSIIVS 206
           ++ +DN +R V++A GN +VN I ++
Sbjct: 504 MDSIDNELRDVLLALGNRQVNEIFLA 529


>AJ132699-1|CAA10735.1|  742|Caenorhabditis elegans centaurin beta
           1B protein.
          Length = 742

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 129 VNRVDNLIRIVIVANGNEKVNSIIVS 206
           ++ +DN +R V++A GN +VN I ++
Sbjct: 420 MDSIDNELRDVLLALGNRQVNEIFLA 445


>AJ132698-1|CAA10734.1|  826|Caenorhabditis elegans centaurin beta
           1A protein.
          Length = 826

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 129 VNRVDNLIRIVIVANGNEKVNSIIVS 206
           ++ +DN +R V++A GN +VN I ++
Sbjct: 504 MDSIDNELRDVLLALGNRQVNEIFLA 529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,985,523
Number of Sequences: 27780
Number of extensions: 90233
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)