Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30655
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   6.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 228 HLICFFYNFLKLSLTPKKENYLKIIST 308
           H  C + N    S+TP  +NY K  ST
Sbjct: 433 HFQCRYPN---ASVTPYNKNYTKFCST 456


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 206 ISKLVLISSHMFFL*FLKI 262
           +S  +LIS H+FFL  ++I
Sbjct: 278 LSISILISLHVFFLLVVEI 296


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 206 ISKLVLISSHMFFL*FLKI 262
           +S  +LIS H+FFL  ++I
Sbjct: 278 LSISILISLHVFFLLVVEI 296


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 78  FFFICDYMHF 107
           +FFIC  +HF
Sbjct: 454 YFFICPSIHF 463


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 78  FFFICDYMHF 107
           +FFIC  +HF
Sbjct: 454 YFFICPSIHF 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,255
Number of Sequences: 438
Number of extensions: 1221
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)