Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30654
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    27   0.53 
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    24   5.0  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    24   5.0  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    22   5.1  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   6.6  
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    23   8.7  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  LQDRLGLKKMDKAGKLIFLSTPGDHLR 150
           L + LGLK +   GKL  +S PG HL+
Sbjct: 255 LYESLGLKDLVNQGKLETISFPGRHLQ 281


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = +1

Query: 88  LKKMDKAGKLIFLSTPGDHLRFTEEWMIKNIIKP 189
           L+K+D +   I++  P +++RF ++ ++K  ++P
Sbjct: 381 LEKLDLSECDIYMLGPNNYMRFVKQELVKLGVEP 414


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 89  RPSRSCK*ILDSLNDTNFSACP 24
           R S SC+ ILD LN+  FS CP
Sbjct: 450 RSSDSCRAILDILNNYIFS-CP 470


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 21.8 bits (44), Expect(2) = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 289 FIHQVLNKISRVLIEGASS 233
           F+++ L    R+L+EGA++
Sbjct: 216 FMYEALQSKKRILVEGANA 234



 Score = 20.6 bits (41), Expect(2) = 5.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 148 VDGRRALIRKLIFPLYPF 95
           V+G  AL+  L F  YPF
Sbjct: 229 VEGANALMLDLDFGTYPF 246


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 13  FYAPGQAEKLVSLRESKIYLQDRL 84
           + APGQ   L  +R   IY+ +R+
Sbjct: 487 YLAPGQTTALAQMRAVFIYISERI 510


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 5   GSVFTLRDRPRNWYR*GNLRFICRID 82
           GSV T+   P   YR GN+  I ++D
Sbjct: 292 GSVVTVWSAPNYCYRCGNVASILQLD 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,805
Number of Sequences: 5004
Number of extensions: 20263
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)